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RdRp

Euk-Vir

Hubei_permutotetra-like_virus_11

RdRp__YP_009337276__Hubei_permutotetra-like_virus_11__1923075

Identity

Accession:
YP_009337276 ↗
Protein ID:
RdRp
Kingdom:
euk

Quality

82.1 mean pLDDT

Cluster

View cluster (20 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 841-984
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 33.0 3.55e-01 98.6% 69.9%
4e72A01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.54 32.0 3.40e-01 95.1% 65.3%
3cygA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.53 31.0 3.39e-01 80.6% 69.7%
2bngC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 31.0 3.20e-01 99.3% 58.6%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 31.0 3.34e-01 98.6% 68.3%
6ro0D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 30.0 3.35e-01 96.5% 73.6%
5cxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 32.0 3.34e-01 98.6% 66.4%
2shpB03 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.50 40.0 3.26e-01 84.7% 77.0%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3629963 330.1.1.6 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Staufen_C 0.65 42.0 4.99e-01 90.3% 94.9%
4604718 330.6.1.0 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 0.55 34.0 4.18e-01 99.3% 98.9%
3470640 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.51 40.0 3.09e-01 84.0% 75.5%
D2 medium residues 12-43_221-278
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22152.2 best Permu_RdRp_palm 71.0 1.20e-19 100.0% 23.2%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1699894 304.48.2.2 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › 'palm' domain in birnaviruse RNA-dependent RNA polymerase › Permu_RdRp_palm 0.87 68.0 4.09e-01 81.1% 46.2%
3881579 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 31.0 2.43e-01 88.9% 26.5%
D3 medium residues 508-548_636-646
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.67 45.0 3.69e-01 71.2% 57.9%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 39.0 3.66e-01 71.2% 48.5%
4b0eD00 3.10.20.410 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PapC, N-terminal domain 0.59 42.0 3.56e-01 80.8% 71.0%
3d7tA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 46.0 4.08e-01 92.3% 90.1%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 45.0 3.58e-01 88.5% 91.0%
1a73A00 3.90.75.10 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A 0.57 39.0 2.82e-01 73.1% 37.7%
3mdyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 47.0 3.73e-01 92.3% 69.1%
1pxfA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 45.0 3.59e-01 90.4% 57.7%
4uoiC00 3.30.160.890 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C 0.57 35.0 3.59e-01 75.0% 62.7%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.56 42.0 3.76e-01 80.8% 77.0%
2bklA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.56 44.0 2.72e-01 98.1% 13.9%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.56 39.0 3.17e-01 98.1% 35.0%
2nryD01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 47.0 3.85e-01 92.3% 85.9%
6bfnA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 46.0 3.82e-01 92.3% 82.8%
1mk1A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.55 45.0 3.09e-01 90.4% 55.6%
6j5tB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 42.0 3.42e-01 92.3% 69.2%
1k07A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.55 44.0 2.84e-01 92.3% 40.1%
3g2fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 43.0 3.76e-01 92.3% 89.7%
4l5tB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 43.0 3.68e-01 92.3% 61.5%
6ziwI01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 44.0 3.87e-01 92.3% 92.3%
3sfvB01 3.30.450.390 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 40.0 2.97e-01 98.1% 30.3%
3zl8A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.53 42.0 2.81e-01 90.4% 24.3%
3fvqA03 2.40.50.470 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 41.0 3.98e-01 96.2% 75.9%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.53 45.0 3.65e-01 100.0% 57.1%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 39.0 4.06e-01 80.8% 93.3%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.53 43.0 2.81e-01 98.1% 26.8%
6l4qB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 41.0 3.17e-01 92.3% 50.4%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 42.0 3.61e-01 94.2% 67.0%
1je0C00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.52 45.0 3.00e-01 100.0% 96.0%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 42.0 3.50e-01 94.2% 67.0%
1bbuA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 41.0 3.12e-01 92.3% 45.7%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.52 39.0 3.15e-01 86.5% 74.3%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 42.0 3.17e-01 94.2% 46.8%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.52 43.0 4.29e-01 100.0% 98.1%
2xgtB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 41.0 3.46e-01 94.2% 64.4%
4gnxB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 41.0 3.22e-01 92.3% 43.4%
1ry9A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 43.0 3.27e-01 98.1% 74.4%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.51 42.0 3.78e-01 100.0% 66.3%
3qpbF00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.51 43.0 2.83e-01 100.0% 94.4%
1e8cA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.51 40.0 2.68e-01 92.3% 29.0%
4l5rC02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 41.0 3.52e-01 94.2% 64.0%
1mhyD00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.50 41.0 2.43e-01 100.0% 70.8%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4317544 4967.1.1.0 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.65 45.0 3.65e-01 73.1% 69.0%
3892942 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.64 41.0 4.18e-01 76.9% 68.0%
3244960 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 45.0 3.95e-01 75.0% 57.3%
3931122 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 41.0 3.43e-01 94.2% 38.9%
3315072 375.13.1.1 ↗ few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt 0.61 45.0 4.23e-01 94.2% 64.6%
3987356 3067.1.1.1 ↗ few secondary structure elements › N-terminal domain of helicase-loading protein DnaI › N-terminal domain of helicase-loading protein DnaI › N-terminal domain of helicase-loading protein DnaI › DnaI_N 0.60 43.0 3.77e-01 78.8% 82.4%
3396305 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.60 41.0 4.00e-01 73.1% 66.1%
3255474 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.59 47.0 2.98e-01 94.2% 26.8%
3746948 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.59 41.0 3.42e-01 75.0% 58.9%
None — 0.58 45.0 2.59e-01 90.4% 10.6%
4026577 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.57 39.0 3.87e-01 71.2% 70.9%
None — 0.57 45.0 2.58e-01 90.4% 10.9%
3498107 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 48.0 2.98e-01 94.2% 24.0%
4959982 3110.1.1.0 ↗ a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain 0.56 48.0 3.28e-01 100.0% 54.6%
3305101 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 36.0 2.69e-01 71.2% 23.3%
3498699 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.55 47.0 3.23e-01 98.1% 72.3%
4966955 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.55 41.0 3.84e-01 84.6% 64.3%
4959053 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 44.0 4.03e-01 90.4% 78.6%
4277447 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.55 45.0 3.03e-01 94.2% 31.6%
3495619 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.55 40.0 3.23e-01 98.1% 38.2%
3792405 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 46.0 2.68e-01 96.2% 65.9%
3674725 206.1.1.74 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.55 44.0 2.71e-01 92.3% 22.0%
3379086 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.55 45.0 2.86e-01 92.3% 28.7%
3586688 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 40.0 3.34e-01 80.8% 52.6%
3812366 2484.1.1.20 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.54 44.0 3.02e-01 96.2% 96.7%
5000651 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.54 45.0 2.71e-01 96.2% 41.0%
4950404 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.54 41.0 3.74e-01 86.5% 64.0%
3401966 2.1.1.350 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30298 0.54 44.0 3.10e-01 94.2% 53.9%
4411726 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.54 40.0 3.74e-01 80.8% 70.8%
3867672 2.1.1.22 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › HIN 0.53 39.0 3.65e-01 80.8% 67.6%
3734354 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.53 43.0 3.22e-01 92.3% 47.9%
3933890 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.53 43.0 3.52e-01 92.3% 59.0%
4947834 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 42.0 3.47e-01 96.2% 45.7%
5035289 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.53 41.0 2.64e-01 90.4% 20.4%
5065528 330.7.1.0 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.52 42.0 3.88e-01 90.4% 68.6%
3802532 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 44.0 2.95e-01 98.1% 92.3%
6632 241.1.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Invas_SpaK 0.52 42.0 3.28e-01 98.1% 59.0%
5046464 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.52 43.0 3.40e-01 96.2% 47.0%
4973804 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 36.0 3.31e-01 76.9% 98.7%
4114247 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.52 41.0 3.82e-01 92.3% 85.7%
5026964 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 41.0 3.42e-01 92.3% 63.0%
4041632 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 40.0 3.02e-01 90.4% 42.8%
5077254 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.51 40.0 2.38e-01 90.4% 31.1%
3405538 219.1.1.111 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.51 35.0 2.31e-01 76.9% 16.9%
3649141 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 41.0 3.21e-01 96.2% 46.9%
4167784 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.51 41.0 3.79e-01 92.3% 92.9%
4003459 2004.1.1.16 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.51 42.0 2.80e-01 96.2% 63.5%
4953898 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.51 42.0 3.24e-01 96.2% 43.2%
4946587 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 39.0 2.97e-01 86.5% 37.7%
D4 medium residues 728-783
PDB
Domain cluster: representative
CATH (88)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4u7bA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 57.0 6.48e-01 73.2% 100.0%
6oinA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 64.0 6.05e-01 83.9% 79.1%
1l0oC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 57.0 5.69e-01 73.2% 78.9%
2e7xA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 58.0 6.00e-01 76.8% 88.5%
4pcqA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 57.0 5.96e-01 75.0% 92.0%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 57.0 6.04e-01 76.8% 92.0%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 57.0 5.87e-01 76.8% 85.2%
1s3jA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 62.0 5.91e-01 83.9% 92.2%
4a0zA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 61.0 6.08e-01 83.9% 79.7%
2xrnB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 62.0 5.92e-01 83.9% 85.9%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 62.0 4.96e-01 83.9% 56.7%
3g3zA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 61.0 5.84e-01 83.9% 89.1%
4wcgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 61.0 5.95e-01 83.9% 88.5%
3bddD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 63.0 4.73e-01 87.5% 43.9%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.77 53.0 4.03e-01 76.8% 31.7%
4kmfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 62.0 5.99e-01 85.7% 91.9%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 57.0 5.02e-01 78.6% 58.7%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 59.0 5.58e-01 82.1% 74.6%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 62.0 4.65e-01 89.3% 51.8%
2l4mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 59.0 5.54e-01 83.9% 79.7%
1u2wD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 56.0 4.72e-01 80.4% 46.8%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 52.0 5.10e-01 75.0% 65.6%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 59.0 4.78e-01 83.9% 52.9%
2dbbB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 57.0 5.76e-01 80.4% 87.3%
2xvcA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 57.0 5.71e-01 80.4% 89.3%
2gxgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 60.0 4.44e-01 85.7% 48.6%
2z99A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 58.0 5.05e-01 83.9% 69.0%
2wteA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 59.0 5.40e-01 83.9% 73.6%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 63.0 4.68e-01 92.9% 52.8%
5y6iA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 57.0 5.24e-01 82.1% 74.0%
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.75 51.0 5.34e-01 75.0% 78.4%
2dk5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 56.0 5.38e-01 82.1% 90.9%
2a61B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 64.0 4.80e-01 96.4% 54.7%
4rgxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 58.0 4.40e-01 85.7% 43.3%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 58.0 4.24e-01 85.7% 45.7%
2fxaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 62.0 4.45e-01 91.1% 40.4%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 62.0 4.63e-01 92.9% 50.7%
4rs8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 59.0 5.21e-01 87.5% 69.0%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 61.0 4.68e-01 91.1% 51.9%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 56.0 5.21e-01 83.9% 78.1%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 56.0 4.86e-01 83.9% 65.2%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 51.0 4.57e-01 78.6% 51.2%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 63.0 4.63e-01 96.4% 45.7%
2h09A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 57.0 5.33e-01 85.7% 80.3%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 61.0 5.10e-01 92.9% 69.4%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 62.0 4.67e-01 94.6% 50.7%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 63.0 4.69e-01 96.4% 56.7%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 55.0 4.67e-01 82.1% 58.5%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 56.0 5.18e-01 83.9% 79.2%
2v9vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 56.0 5.57e-01 85.7% 93.3%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 59.0 4.55e-01 89.3% 54.0%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 53.0 4.60e-01 78.6% 54.0%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 51.0 5.18e-01 75.0% 75.9%
2jt1A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 58.0 5.37e-01 87.5% 93.0%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.73 55.0 4.09e-01 82.1% 80.3%
4yifF00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 61.0 4.68e-01 94.6% 50.8%
2hr3D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 56.0 5.45e-01 85.7% 91.9%
4o5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 56.0 5.18e-01 83.9% 77.5%
2dt5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 55.0 5.09e-01 83.9% 69.9%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 53.0 5.33e-01 80.4% 81.0%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 51.0 5.17e-01 80.4% 76.4%
3e6mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 58.0 4.31e-01 91.1% 45.2%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 52.0 5.03e-01 78.6% 76.2%
4ivnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 53.0 4.78e-01 80.4% 60.5%
2j5oA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 54.0 5.17e-01 82.1% 75.4%
1k78A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 48.0 4.62e-01 78.6% 60.6%
3lmmC04 1.10.10.2340 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.71 54.0 4.75e-01 85.7% 66.7%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.70 52.0 4.41e-01 80.4% 96.8%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 53.0 5.04e-01 83.9% 76.1%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 52.0 4.52e-01 83.9% 61.4%
2o3fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 51.0 4.57e-01 82.1% 65.9%
2qtqB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.68 50.0 3.43e-01 78.6% 23.9%
3k9tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 50.0 4.78e-01 80.4% 69.7%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 53.0 4.93e-01 85.7% 68.6%
3iwfB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 52.0 4.51e-01 85.7% 60.7%
1r71A01 1.10.10.730 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain 0.67 48.0 4.82e-01 78.6% 76.8%
2ijlB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 56.0 4.59e-01 96.4% 62.4%
3gwzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 50.0 4.42e-01 83.9% 60.7%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.67 53.0 4.36e-01 87.5% 99.0%
4kibA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 49.0 4.22e-01 83.9% 53.5%
1b9mB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 54.0 4.53e-01 92.9% 65.7%
2oerA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.66 50.0 3.49e-01 82.1% 54.7%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 50.0 5.05e-01 83.9% 87.5%
2llkA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 45.0 4.92e-01 75.0% 100.0%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 4.25e-01 83.9% 55.6%
2ao9I01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 47.0 4.08e-01 82.1% 50.6%
2ys9A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 44.0 4.10e-01 75.0% 61.4%
4r8zA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.52 41.0 2.88e-01 96.4% 35.3%
ECOD (97)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4966962 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.85 63.0 6.45e-01 78.6% 90.6%
3937075 101.1.1.62 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_24 0.83 60.0 6.09e-01 78.6% 78.2%
3928067 101.1.1.356 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_11 0.83 60.0 6.04e-01 78.6% 78.2%
3927026 101.1.1.195 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_5 0.82 61.0 5.24e-01 80.4% 51.8%
4990227 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.82 64.0 6.25e-01 83.9% 93.3%
4998812 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.82 60.0 5.73e-01 78.6% 72.3%
5072288 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 63.0 5.59e-01 83.9% 65.0%
3962397 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.81 58.0 5.52e-01 76.8% 64.6%
4439631 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.81 59.0 5.96e-01 76.8% 85.5%
5009656 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 60.0 5.71e-01 78.6% 67.7%
4944620 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 59.0 6.04e-01 78.6% 85.5%
5078072 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.81 59.0 5.66e-01 78.6% 73.8%
5036798 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 67.0 6.77e-01 89.3% 98.2%
5035689 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.81 63.0 5.83e-01 83.9% 80.0%
3929142 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 61.0 6.02e-01 82.1% 76.7%
4391264 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.80 62.0 6.10e-01 83.9% 78.3%
4979451 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.80 59.0 5.63e-01 78.6% 72.3%
4926890 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.80 59.0 5.00e-01 78.6% 53.3%
4933352 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.80 61.0 6.20e-01 82.1% 92.7%
5044109 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.80 59.0 5.45e-01 78.6% 68.6%
4947593 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.80 59.0 5.95e-01 78.6% 85.5%
4978386 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.80 59.0 5.49e-01 78.6% 70.6%
3164718 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.79 57.0 5.19e-01 76.8% 62.7%
4984666 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.79 59.0 5.30e-01 78.6% 64.0%
4941943 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.79 57.0 5.59e-01 76.8% 78.3%
5077990 101.1.1.62 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_24 0.79 58.0 4.93e-01 78.6% 53.3%
5058496 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.79 58.0 5.36e-01 78.6% 68.6%
5077219 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 58.0 5.51e-01 78.6% 72.3%
4968185 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 59.0 5.46e-01 82.1% 75.3%
4985252 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.78 58.0 5.50e-01 78.6% 75.4%
4979740 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.78 58.0 5.58e-01 80.4% 73.8%
3957509 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.78 57.0 5.62e-01 78.6% 80.0%
4973395 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.78 58.0 5.68e-01 78.6% 80.0%
5030106 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.78 57.0 5.82e-01 78.6% 87.3%
4941829 101.1.2.93 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Mga 0.78 61.0 4.68e-01 83.9% 44.2%
3461891 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 60.0 4.96e-01 83.9% 58.0%
5031940 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.78 56.0 5.35e-01 76.8% 70.8%
5062343 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 56.0 5.82e-01 78.6% 86.0%
4931184 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.77 56.0 5.64e-01 76.8% 83.6%
5026801 101.1.2.530 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_A0114 0.77 60.0 5.51e-01 83.9% 76.7%
3952144 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.77 57.0 5.44e-01 78.6% 73.8%
5075437 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.77 57.0 5.29e-01 78.6% 68.6%
4927482 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.77 56.0 5.83e-01 76.8% 86.0%
5076741 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.77 55.0 5.73e-01 76.8% 84.0%
5030878 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.77 55.0 5.31e-01 76.8% 70.8%
5050106 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 62.0 5.61e-01 87.5% 97.3%
5072420 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 54.0 5.66e-01 78.6% 84.0%
4978146 101.1.1.62 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_24 0.77 57.0 5.26e-01 78.6% 68.6%
3279531 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.77 55.0 5.59e-01 76.8% 83.6%
3282258 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.76 57.0 5.30e-01 80.4% 70.0%
4945048 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 55.0 5.57e-01 76.8% 76.4%
4969831 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 66.0 4.92e-01 98.2% 68.6%
4927812 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.76 54.0 4.96e-01 76.8% 57.3%
4955429 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.76 55.0 5.46e-01 78.6% 78.3%
3290617 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.76 65.0 4.77e-01 94.6% 51.0%
3289544 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.76 55.0 5.30e-01 78.6% 75.4%
5031608 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.76 57.0 4.99e-01 82.1% 64.7%
5051760 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.75 56.0 5.36e-01 80.4% 75.4%
5082754 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.75 55.0 5.42e-01 78.6% 78.3%
4952035 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.75 53.0 5.25e-01 80.4% 70.0%
5073261 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.75 54.0 5.03e-01 76.8% 65.7%
5045791 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 57.0 4.23e-01 82.1% 35.7%
3289426 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.75 63.0 4.64e-01 92.9% 53.8%
5031872 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 57.0 5.61e-01 82.1% 83.3%
4979948 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 55.0 5.54e-01 78.6% 87.3%
5010215 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.75 57.0 5.61e-01 82.1% 81.7%
3989048 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.75 62.0 4.51e-01 91.1% 44.7%
3404418 101.1.1.24 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.74 50.0 4.72e-01 76.8% 57.1%
4473764 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.74 64.0 4.74e-01 96.4% 53.1%
5073992 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.74 56.0 5.24e-01 82.1% 70.0%
4952294 101.1.2.870 ↗ alpha arrays › HTH › HTH › winged helix domain › GerE 0.74 56.0 5.74e-01 82.1% 83.6%
5028932 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.74 54.0 5.32e-01 78.6% 80.0%
5062184 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.74 54.0 5.32e-01 78.6% 78.3%
4926894 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.74 54.0 5.33e-01 78.6% 78.3%
4962330 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 54.0 4.70e-01 80.4% 51.8%
4008322 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.74 49.0 5.01e-01 76.8% 70.9%
3182958 101.1.1.64 ↗ alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_2 0.74 56.0 4.17e-01 82.1% 45.9%
5056682 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 50.0 4.68e-01 76.8% 57.1%
5021052 101.1.2.728 ↗ alpha arrays › HTH › HTH › winged helix domain › PF31122 0.73 58.0 5.22e-01 87.5% 68.4%
5046351 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.73 53.0 4.76e-01 78.6% 60.0%
139963 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 51.0 5.18e-01 75.0% 75.9%
3210747 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.72 49.0 5.37e-01 75.0% 88.9%
5011648 101.1.1.368 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_58 0.72 52.0 5.42e-01 83.9% 86.0%
3473295 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.72 53.0 4.60e-01 78.6% 51.8%
4334195 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 59.0 4.45e-01 92.9% 72.1%
5024511 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 49.0 5.12e-01 76.8% 80.0%
3488459 101.1.1.4 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.71 49.0 4.36e-01 78.6% 50.0%
4980888 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 50.0 4.80e-01 76.8% 64.6%
3967284 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 59.0 5.81e-01 98.2% 88.3%
4372277 101.1.1.96 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Neugrin 0.71 49.0 4.05e-01 76.8% 39.0%
4977345 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 52.0 4.41e-01 80.4% 49.5%
5068679 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.70 50.0 5.07e-01 78.6% 87.3%
3546741 101.1.1.96 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Neugrin 0.69 48.0 3.98e-01 75.0% 41.0%
4961899 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.68 50.0 4.78e-01 80.4% 67.7%
3970951 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 44.0 4.60e-01 75.0% 76.0%
5077710 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 48.0 4.31e-01 83.9% 66.3%
4626289 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.63 49.0 4.73e-01 85.7% 73.8%
D5 medium residues 784-836
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pe0A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 49.0 4.12e-01 90.6% 81.2%
7bi4A01 1.25.40.70 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) 0.63 51.0 3.63e-01 96.2% 54.3%
1e8yA03 1.25.40.70 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) 0.62 51.0 3.63e-01 100.0% 41.9%
1he8A03 1.25.40.70 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) 0.61 50.0 4.14e-01 100.0% 70.3%
2qwoB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.60 47.0 4.07e-01 92.5% 73.9%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.59 47.0 3.44e-01 90.6% 60.5%
4umwA04 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.58 41.0 3.26e-01 83.0% 35.3%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.57 41.0 3.97e-01 79.2% 83.3%
1dliA03 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.57 44.0 3.79e-01 88.7% 90.0%
1wpbG01 1.10.287.680 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.56 40.0 4.04e-01 94.3% 83.3%
3u9jA00 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.54 38.0 2.83e-01 75.5% 27.4%
6mfvC01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 44.0 3.29e-01 96.2% 40.5%
3rqtA02 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.52 43.0 2.93e-01 98.1% 45.1%
4ip8A00 1.10.132.110 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein 0.50 40.0 3.27e-01 90.6% 46.7%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3667878 109.4.1.1724 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SPG48, TPR_AP5Z1_C 0.63 52.0 3.10e-01 100.0% 27.3%
3023206 109.4.1.11 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PI3Ka 0.62 51.0 3.54e-01 96.2% 50.2%
3343376 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.62 42.0 4.46e-01 71.7% 91.1%
3266644 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 50.0 3.84e-01 98.1% 69.6%
4951870 2006.1.4.13 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 0.60 48.0 3.71e-01 90.6% 52.8%
3530843 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.60 49.0 3.92e-01 100.0% 85.6%
5040466 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.58 44.0 4.10e-01 90.6% 82.4%
4980819 622.1.1.0 ↗ alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain 0.56 46.0 4.42e-01 96.2% 87.7%
4286197 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.56 40.0 3.61e-01 79.2% 55.0%
3973569 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.56 43.0 3.54e-01 94.3% 99.1%
4583551 185.1.1.1 ↗ alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl 0.51 35.0 3.12e-01 77.4% 45.3%
D6 medium residues 985-1037
PDB