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RdRp

Euk-Vir

Hubei_permutotetra-like_virus_7

RdRp__YP_009337364__Hubei_permutotetra-like_virus_7__1923081

Identity

Accession:
YP_009337364 ↗
Protein ID:
RdRp
Kingdom:
euk

Quality

71.2 mean pLDDT

Cluster

View cluster (20 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 749-824
PDB
Domain cluster: representative
CATH (95)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ldjA06 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 56.0 5.89e-01 71.1% 97.1%
7l1iA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 57.0 4.39e-01 72.4% 39.9%
4b8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 57.0 4.55e-01 73.7% 42.9%
1j75A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 55.0 6.29e-01 72.4% 98.2%
3bddD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 54.0 4.38e-01 72.4% 40.2%
2qlzA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 56.0 6.14e-01 73.7% 88.9%
1s3jA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 55.0 5.96e-01 72.4% 95.3%
4g9yA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 55.0 4.47e-01 72.4% 44.9%
3g3zA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 55.0 5.94e-01 72.4% 95.3%
2fxaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 56.0 4.31e-01 73.7% 35.9%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 56.0 5.30e-01 73.7% 69.7%
4xrfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 56.0 4.47e-01 73.7% 43.7%
4ha8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 56.0 6.09e-01 73.7% 93.7%
4f52C02 3.30.230.130 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Cullin; Chain C, Domain 2 0.79 56.0 4.31e-01 73.7% 42.8%
2xrnB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 56.0 6.05e-01 73.7% 90.6%
4kmfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 55.0 6.00e-01 72.4% 91.9%
3nrvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 52.0 4.31e-01 72.4% 40.3%
2qvoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 56.0 5.33e-01 73.7% 72.4%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 55.0 5.96e-01 72.4% 93.7%
1ufmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 55.0 5.29e-01 72.4% 69.0%
8amzO01 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.78 54.0 3.42e-01 71.1% 17.9%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 59.0 5.88e-01 78.9% 90.9%
2pexA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 54.0 4.41e-01 73.7% 40.4%
2jt1A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 55.0 5.74e-01 73.7% 94.4%
3dplC02 3.30.230.130 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Cullin; Chain C, Domain 2 0.78 55.0 4.17e-01 73.7% 42.2%
5f7qC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 53.0 5.52e-01 71.1% 90.0%
3e6mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 54.0 4.24e-01 72.4% 39.7%
2v9vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 53.0 5.82e-01 71.1% 96.7%
4b0zA00 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.77 50.0 3.52e-01 72.4% 22.5%
4wcgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 53.0 5.91e-01 72.4% 91.8%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 54.0 4.92e-01 73.7% 62.0%
2z99A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 54.0 5.18e-01 73.7% 72.4%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 54.0 4.51e-01 73.7% 49.2%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 54.0 4.84e-01 73.7% 56.7%
2dk5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 54.0 5.75e-01 73.7% 97.0%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 53.0 4.21e-01 72.4% 40.4%
3to7A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 52.0 5.15e-01 72.4% 66.7%
2vxzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 55.0 5.85e-01 75.0% 89.4%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 53.0 4.74e-01 72.4% 58.7%
1r1uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 54.0 5.00e-01 73.7% 62.4%
3gw2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 54.0 5.01e-01 73.7% 62.4%
6pcoC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 54.0 4.43e-01 73.7% 47.0%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 53.0 4.91e-01 73.7% 60.2%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 53.0 4.22e-01 72.4% 43.0%
3cdhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 52.0 4.28e-01 72.4% 41.0%
2p4wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 53.0 4.77e-01 73.7% 61.2%
6oinA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 51.0 5.44e-01 72.4% 80.6%
2l01A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 57.0 5.68e-01 80.3% 87.0%
1q1hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 52.0 5.06e-01 72.4% 72.9%
2ia2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 52.0 5.51e-01 72.4% 80.9%
4o5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 52.0 5.41e-01 72.4% 83.1%
2nnnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 53.0 4.38e-01 73.7% 47.0%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 53.0 4.26e-01 73.7% 42.1%
2a61B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 52.0 4.21e-01 72.4% 41.6%
2gxgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 52.0 4.19e-01 72.4% 42.9%
4rs8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 53.0 5.12e-01 73.7% 70.2%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 52.0 4.29e-01 72.4% 45.0%
2fbiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 52.0 4.28e-01 73.7% 45.6%
4yifF00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 51.0 4.27e-01 72.4% 42.3%
5jbrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 52.0 4.97e-01 73.7% 72.1%
1jgsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 52.0 4.20e-01 73.7% 44.9%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 51.0 3.94e-01 73.7% 36.9%
1lj9B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 52.0 4.16e-01 73.7% 43.7%
5y6iA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 51.0 5.25e-01 73.7% 79.5%
4e70A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 50.0 4.61e-01 72.4% 64.4%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 51.0 4.72e-01 72.4% 60.2%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 50.0 3.99e-01 72.4% 40.4%
2hr3D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 50.0 5.43e-01 72.4% 93.5%
2fa5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 48.0 3.90e-01 72.4% 37.4%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 51.0 4.24e-01 73.7% 44.2%
3r4kB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 51.0 5.55e-01 73.7% 92.1%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 50.0 4.66e-01 72.4% 64.9%
4d7kA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 50.0 4.61e-01 72.4% 58.3%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 51.0 4.11e-01 73.7% 45.4%
6kf9G01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 50.0 4.89e-01 72.4% 78.0%
3lmmB05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 49.0 5.32e-01 71.1% 93.4%
3gwzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 50.0 4.72e-01 72.4% 64.0%
2o0yB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 50.0 5.39e-01 73.7% 87.7%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 50.0 4.95e-01 73.7% 75.0%
2htjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 49.0 5.37e-01 72.4% 100.0%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 49.0 4.89e-01 72.4% 75.6%
4kibA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 49.0 4.54e-01 73.7% 57.6%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 49.0 5.16e-01 73.7% 85.5%
1bbyA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 48.0 5.04e-01 73.7% 79.7%
2dt5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 49.0 4.97e-01 73.7% 79.5%
3lmmC04 1.10.10.2340 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.69 48.0 4.67e-01 73.7% 70.1%
2hgcA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 48.0 4.77e-01 72.4% 76.9%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 47.0 4.09e-01 72.4% 54.2%
3keoA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 48.0 4.93e-01 73.7% 80.6%
2vqcA00 1.10.10.1470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › F-112 protein-like 0.68 48.0 4.94e-01 73.7% 91.4%
2pjpA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 46.0 4.98e-01 72.4% 90.2%
3mczA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 45.0 4.46e-01 73.7% 67.1%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.63 46.0 3.83e-01 78.9% 74.1%
3tj8A02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.58 42.0 4.33e-01 77.6% 95.9%
1rq8A00 3.30.110.60 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › YhbY-like 0.56 41.0 3.86e-01 80.3% 71.9%
ECOD (97)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3189146 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.86 59.0 4.94e-01 73.7% 45.0%
3218738 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.84 59.0 5.72e-01 73.7% 78.8%
4997405 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.84 59.0 4.82e-01 73.7% 45.1%
5043830 101.1.2.650 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7343 0.83 57.0 5.08e-01 71.1% 55.2%
3508433 101.1.2.304 ↗ alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase 0.83 57.0 5.98e-01 71.1% 78.6%
4942252 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.83 59.0 5.97e-01 73.7% 80.0%
5012661 101.1.2.650 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7343 0.83 58.0 5.88e-01 72.4% 78.7%
5079009 101.1.2.650 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7343 0.82 58.0 5.80e-01 73.7% 76.9%
4971048 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.82 58.0 5.60e-01 73.7% 74.1%
4947948 101.1.2.876 ↗ alpha arrays › HTH › HTH › winged helix domain › tRNA-synt_2d 0.82 58.0 5.60e-01 73.7% 77.6%
4939103 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.82 57.0 5.77e-01 72.4% 78.7%
4941751 101.1.2.650 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7343 0.81 58.0 5.84e-01 73.7% 80.0%
4942939 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.81 57.0 5.92e-01 72.4% 84.3%
4976781 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 56.0 6.28e-01 72.4% 95.0%
3516581 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 57.0 5.28e-01 73.7% 82.1%
5035689 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.81 56.0 5.89e-01 72.4% 84.3%
4992688 101.1.2.650 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7343 0.81 57.0 5.78e-01 73.7% 80.0%
4993666 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.80 57.0 4.90e-01 73.7% 52.2%
4991491 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.80 57.0 4.99e-01 73.7% 54.5%
4201017 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.80 57.0 4.37e-01 73.7% 38.7%
3981504 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.80 57.0 5.62e-01 73.7% 72.5%
5075049 105.2.1.0 ↗ alpha duplicates or obligate multimers › HLH-like › Dimerization domain in LRIM1/APL1C › Dimerization domain in LRIM1/APL1C 0.80 57.0 4.31e-01 73.7% 34.5%
5072150 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.80 56.0 5.05e-01 73.7% 55.0%
5025922 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.80 57.0 5.63e-01 73.7% 76.2%
4991339 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.80 57.0 4.59e-01 73.7% 43.7%
5057584 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.80 57.0 5.13e-01 73.7% 60.0%
4986758 101.1.2.650 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7343 0.80 57.0 5.17e-01 73.7% 61.2%
4955274 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.80 57.0 6.27e-01 73.7% 100.0%
4956336 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.80 56.0 5.04e-01 72.4% 58.0%
4221580 101.1.2.650 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7343 0.80 57.0 5.13e-01 73.7% 60.0%
4217425 101.1.2.304 ↗ alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase 0.80 58.0 5.42e-01 75.0% 64.4%
5057174 101.1.2.650 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7343 0.79 54.0 5.50e-01 71.1% 76.0%
4982990 101.1.2.650 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7343 0.79 56.0 5.21e-01 73.7% 63.8%
5045993 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 58.0 6.21e-01 76.3% 93.8%
5021499 101.1.2.650 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7343 0.79 56.0 5.40e-01 73.7% 70.6%
4993831 101.1.2.650 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7343 0.79 56.0 4.89e-01 73.7% 54.5%
3988037 101.1.2.89 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_DeoR 0.79 55.0 5.43e-01 73.7% 68.8%
4992597 101.1.2.650 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7343 0.79 56.0 5.05e-01 73.7% 60.0%
5069569 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.79 56.0 5.50e-01 73.7% 80.0%
4076677 101.1.2.63 ↗ alpha arrays › HTH › HTH › winged helix domain › FaeA 0.79 56.0 5.66e-01 73.7% 81.3%
3620005 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 56.0 5.37e-01 73.7% 78.8%
4378797 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.79 56.0 4.37e-01 73.7% 41.3%
4956611 101.1.2.650 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7343 0.79 56.0 5.37e-01 73.7% 70.6%
4983026 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 55.0 5.69e-01 72.4% 90.0%
4983659 101.1.2.650 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7343 0.78 55.0 5.07e-01 73.7% 61.2%
1146763 101.1.2.72 ↗ alpha arrays › HTH › HTH › winged helix domain › Sulfolobus_pRN 0.78 59.0 5.88e-01 78.9% 90.9%
3289766 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.78 55.0 5.53e-01 72.4% 85.3%
4947949 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 54.0 5.13e-01 72.4% 65.6%
4022000 101.1.2.79 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 0.78 55.0 5.75e-01 73.7% 85.7%
3499819 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 54.0 5.65e-01 72.4% 88.6%
5078271 101.1.2.280 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.78 54.0 5.51e-01 72.4% 83.8%
5045722 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.78 55.0 5.59e-01 73.7% 80.0%
5008107 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.78 54.0 4.81e-01 72.4% 59.0%
3603300 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.77 54.0 5.85e-01 72.4% 92.1%
4988740 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.77 55.0 5.05e-01 73.7% 62.1%
5024008 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 54.0 5.31e-01 72.4% 73.8%
5048188 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 54.0 4.14e-01 72.4% 43.8%
5062558 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.77 55.0 5.53e-01 73.7% 84.0%
5011044 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.77 54.0 4.84e-01 73.7% 54.3%
5016882 101.1.2.650 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7343 0.77 54.0 5.36e-01 73.7% 73.8%
4329890 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.77 54.0 4.29e-01 73.7% 42.7%
5041695 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.77 53.0 5.56e-01 72.4% 84.3%
3623861 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 54.0 5.35e-01 73.7% 75.0%
5068392 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.77 54.0 5.38e-01 73.7% 73.8%
3262891 101.1.2.79 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 0.77 54.0 5.79e-01 73.7% 89.2%
5015759 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 54.0 5.48e-01 73.7% 74.7%
4962776 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.76 54.0 4.83e-01 73.7% 56.2%
5042935 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.76 54.0 5.02e-01 73.7% 66.3%
5036006 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 54.0 4.39e-01 73.7% 41.5%
4944865 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.76 54.0 4.78e-01 73.7% 56.2%
3641521 101.1.2.79 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 0.76 54.0 5.45e-01 73.7% 77.3%
5005001 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 54.0 4.78e-01 73.7% 56.2%
3741967 101.1.15.1 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.75 51.0 4.92e-01 85.5% 62.4%
5073503 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 55.0 4.75e-01 76.3% 60.0%
3519664 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 53.0 5.24e-01 73.7% 70.0%
3884555 101.1.2.122 ↗ alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K 0.75 52.0 4.94e-01 72.4% 61.1%
3603007 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.75 53.0 5.35e-01 73.7% 80.0%
4993352 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.74 52.0 5.19e-01 73.7% 76.2%
5021052 101.1.2.728 ↗ alpha arrays › HTH › HTH › winged helix domain › PF31122 0.74 51.0 5.12e-01 73.7% 69.6%
3881281 101.1.2.79 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 0.74 52.0 5.26e-01 73.7% 89.3%
4954315 101.1.2.128 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2582 0.73 51.0 5.33e-01 73.7% 78.6%
4948576 101.1.2.37 ↗ alpha arrays › HTH › HTH › winged helix domain › E2F_TDP 0.73 51.0 5.43e-01 72.4% 95.4%
3969354 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 52.0 4.19e-01 73.7% 45.0%
4958728 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.72 53.0 5.20e-01 76.3% 78.8%
5026584 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.72 50.0 4.70e-01 73.7% 64.2%
4961649 101.1.2.650 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7343 0.71 59.0 6.03e-01 90.8% 94.7%
2646 101.1.2.35 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIF_beta 0.70 48.0 5.01e-01 72.4% 78.3%
4473438 101.1.2.122 ↗ alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K 0.70 49.0 5.35e-01 73.7% 91.7%
4979405 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 48.0 5.34e-01 71.1% 90.0%
3739297 101.1.2.79 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 0.70 56.0 5.53e-01 85.5% 92.5%
3355109 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 53.0 4.59e-01 80.3% 78.3%
399715 101.1.2.79 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 0.70 56.0 5.26e-01 85.5% 81.3%
5048315 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 51.0 4.23e-01 80.3% 57.7%
3925501 101.1.2.122 ↗ alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K 0.66 46.0 4.23e-01 72.4% 57.0%
3498965 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 56.0 5.16e-01 90.8% 84.2%
4946708 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 51.0 4.40e-01 86.8% 84.0%
3556744 101.1.2.79 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 0.64 53.0 5.42e-01 90.8% 92.0%
D2 high residues 847-939
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4wyqB00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.66 48.0 5.26e-01 78.5% 96.0%
2khxA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 45.0 4.81e-01 74.2% 91.1%
2l2mA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 41.0 4.52e-01 73.1% 100.0%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 41.0 3.83e-01 74.2% 85.1%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 41.0 4.23e-01 77.4% 80.2%
1o9nA00 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.56 39.0 2.58e-01 72.0% 40.8%
3ia8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 44.0 3.65e-01 82.8% 87.7%
2fwvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 43.0 3.44e-01 82.8% 96.3%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.91e-01 87.1% 75.6%
2a9sB00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.54 39.0 3.31e-01 77.4% 97.6%
6izcA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 47.0 3.43e-01 100.0% 94.3%
1uctA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.80e-01 74.2% 98.9%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.52 35.0 3.80e-01 90.3% 88.7%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.52 41.0 3.57e-01 86.0% 86.3%
4ewfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 47.0 3.37e-01 100.0% 90.7%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.51 41.0 3.64e-01 87.1% 78.2%
3d9wA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.51 41.0 4.03e-01 88.2% 95.1%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 42.0 2.88e-01 90.3% 30.7%
4qd4A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 45.0 3.02e-01 98.9% 96.9%
4mjgA00 3.30.2030.30 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.50 41.0 3.37e-01 90.3% 88.1%
3nvqA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 40.0 2.63e-01 88.2% 90.2%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3607863 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.75 54.0 5.36e-01 77.4% 72.6%
3610755 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.72 53.0 4.97e-01 77.4% 70.4%
3592741 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.72 55.0 5.70e-01 80.6% 88.2%
4487255 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.71 50.0 5.44e-01 76.3% 90.7%
3846927 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.71 53.0 5.32e-01 89.2% 78.9%
3370322 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.70 50.0 5.14e-01 76.3% 77.8%
3735697 330.1.1.19 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 0.70 52.0 5.56e-01 78.5% 92.5%
4194213 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.69 49.0 5.45e-01 73.1% 98.6%
3748189 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.69 51.0 5.43e-01 80.6% 91.3%
2987309 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.68 51.0 5.57e-01 78.5% 100.0%
3596303 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.68 48.0 5.27e-01 74.2% 93.3%
4106397 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 49.0 5.38e-01 78.5% 94.7%
3801624 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.67 49.0 4.80e-01 76.3% 73.0%
3339684 2484.1.1.110 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.67 51.0 4.62e-01 100.0% 59.2%
3466381 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 52.0 4.93e-01 83.9% 86.4%
3502939 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.67 49.0 4.99e-01 77.4% 80.0%
None — 0.66 52.0 3.98e-01 100.0% 37.1%
3221077 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.66 51.0 5.45e-01 81.7% 95.0%
3357309 2484.1.1.110 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.66 52.0 3.58e-01 100.0% 24.7%
3304792 2484.1.1.110 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.66 52.0 4.57e-01 100.0% 57.8%
3453547 2484.1.1.110 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.66 51.0 3.68e-01 100.0% 28.4%
3209694 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 51.0 5.00e-01 82.8% 78.0%
3827180 2484.1.1.110 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.66 51.0 4.20e-01 100.0% 46.7%
3371527 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 51.0 4.64e-01 83.9% 78.2%
3455406 2484.1.1.110 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.65 51.0 4.58e-01 100.0% 60.0%
3619246 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 51.0 4.95e-01 84.9% 88.6%
3961733 330.10.1.0 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain 0.65 48.0 4.94e-01 78.5% 81.1%
3531333 220.1.1.35 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IQ_SEC7_PH 0.64 46.0 3.81e-01 75.3% 75.2%
3426629 2484.1.1.110 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.63 51.0 4.40e-01 100.0% 54.7%
2987310 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 51.0 4.92e-01 89.2% 88.9%
4140206 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.63 48.0 5.02e-01 81.7% 89.4%
3543887 330.1.1.6 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Staufen_C 0.63 51.0 5.01e-01 89.2% 93.0%
3710325 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 44.0 4.72e-01 74.2% 96.2%
5003996 330.10.1.0 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain 0.62 46.0 4.54e-01 78.5% 75.0%
3752886 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 50.0 4.87e-01 89.2% 91.4%
3685219 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 41.0 3.58e-01 71.0% 73.8%
4966560 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.59 45.0 3.32e-01 82.8% 86.3%
None — 0.59 45.0 3.07e-01 81.7% 62.4%
4929364 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.59 36.0 4.20e-01 83.9% 87.7%
4538612 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.58 45.0 2.98e-01 81.7% 57.0%
4952831 330.10.1.1 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO 0.58 45.0 4.59e-01 97.8% 87.8%
4935879 330.10.1.1 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO 0.57 45.0 4.59e-01 97.8% 87.8%
None — 0.57 45.0 3.09e-01 84.9% 57.6%
4074329 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.57 34.0 3.76e-01 72.0% 74.7%
4927398 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.57 40.0 3.47e-01 75.3% 81.3%
3983343 223.3.1.9 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › DUF2300 0.57 51.0 3.80e-01 98.9% 100.0%
4586844 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.57 43.0 2.74e-01 81.7% 44.6%
3893915 330.1.1.3 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer 0.56 49.0 4.49e-01 97.8% 75.2%
4446492 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.56 43.0 2.85e-01 81.7% 56.7%
5015489 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.56 44.0 2.83e-01 86.0% 47.3%
None — 0.56 44.0 3.00e-01 86.0% 63.6%
None — 0.56 44.0 2.93e-01 84.9% 58.7%
4433785 283.2.1.4 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GP46 0.56 41.0 3.73e-01 78.5% 93.1%
3938714 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 40.0 3.65e-01 75.3% 76.8%
5048236 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.55 43.0 2.88e-01 82.8% 60.5%
3497129 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 48.0 4.66e-01 97.8% 89.5%
3639482 220.1.1.211 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7612 0.53 43.0 3.83e-01 89.2% 87.1%
3594026 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 43.0 3.96e-01 89.2% 93.5%
1749 11.1.1.178 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.53 37.0 3.72e-01 73.1% 94.7%
3239355 220.1.1.46 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.53 42.0 3.79e-01 87.1% 86.2%
3947082 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 36.0 3.66e-01 71.0% 100.0%
4029544 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 42.0 3.71e-01 88.2% 68.6%
3861438 220.1.1.174 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Cybc1_Eros 0.52 43.0 3.98e-01 90.3% 79.2%
3615163 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 41.0 3.97e-01 88.2% 75.7%
3565552 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 41.0 3.71e-01 87.1% 77.6%
3624046 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 40.0 3.74e-01 86.0% 80.0%
D3 medium residues 339-382_472-514
PDB
Domain cluster: rep: putative_RNA-dependent_RNA_polymerase__YP_009182196__Daeseongdong_virus_2_Viruses.__X__D316-378_499-510
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 41.0 4.42e-01 80.5% 68.4%
3nvoA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.69 38.0 3.33e-01 94.3% 36.6%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.67 37.0 3.14e-01 77.0% 34.1%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.65 35.0 3.61e-01 78.2% 53.6%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.61 37.0 3.86e-01 81.6% 65.0%
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.61 40.0 4.68e-01 94.3% 95.1%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.60 32.0 3.25e-01 80.5% 51.2%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.59 37.0 3.12e-01 83.9% 36.8%
1pcfA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.59 35.0 3.87e-01 78.2% 75.8%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.57 37.0 4.29e-01 94.3% 96.7%
6mv2A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 45.0 4.30e-01 86.2% 77.5%
1k8kD01 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 45.0 3.71e-01 85.1% 68.2%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 40.0 2.81e-01 75.9% 35.9%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.56 38.0 3.04e-01 71.3% 43.8%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 38.0 2.79e-01 73.6% 70.7%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 41.0 3.00e-01 81.6% 90.0%
1nkgA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 40.0 2.95e-01 82.8% 41.4%
4on1A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.53 38.0 3.34e-01 100.0% 48.9%
4ccvA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.73e-01 83.9% 65.2%
5ncsA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 41.0 3.51e-01 85.1% 95.0%
1l0wA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 37.0 3.53e-01 82.8% 62.3%
6sulA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 38.0 3.56e-01 78.2% 80.6%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1699894 304.48.2.2 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › 'palm' domain in birnaviruse RNA-dependent RNA polymerase › Permu_RdRp_palm 0.91 87.0 5.16e-01 100.0% 34.2%
3479716 3459.1.1.0 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.70 37.0 3.78e-01 79.3% 51.8%
5014277 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.69 38.0 3.93e-01 81.6% 56.5%
4033134 3264.1.1.0 ↗ 0.69 39.0 3.28e-01 83.9% 32.7%
3367922 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.64 39.0 3.78e-01 81.6% 54.7%
5036807 3111.1.1.0 ↗ beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.63 37.0 3.62e-01 85.1% 51.6%
3736764 3711.1.1.0 ↗ alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.62 43.0 3.39e-01 71.3% 83.3%
5035423 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.61 47.0 4.81e-01 98.9% 84.7%
2516379 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.57 45.0 4.28e-01 86.2% 75.5%
4137051 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.57 45.0 3.02e-01 85.1% 58.0%
3742689 5.1.4.661 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st 0.56 40.0 2.76e-01 75.9% 94.3%
4935362 205.1.1.22 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_21 0.56 41.0 2.73e-01 78.2% 26.8%
3603015 205.1.1.0 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin 0.55 41.0 2.75e-01 80.5% 26.2%
5072371 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 38.0 3.70e-01 92.0% 64.0%
4978622 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 37.0 3.58e-01 92.0% 62.0%
4015358 7579.1.1.49 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › GCE_fung 0.53 39.0 2.60e-01 79.3% 23.9%
4946458 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 42.0 3.66e-01 100.0% 56.3%
3239519 4099.1.1.29 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF29306 0.52 36.0 3.06e-01 71.3% 71.0%
3280245 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.52 40.0 3.79e-01 90.8% 67.6%
3590243 6044.1.1.1 ↗ a+b three layers › DUF1827-like › DUF1827-like › DUF1827-like › DUF1827 0.52 40.0 3.77e-01 81.6% 81.9%
3890932 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.52 39.0 2.71e-01 83.9% 70.9%
3283603 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 4.07e-01 83.9% 83.5%
3221612 12.3.1.42 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF2152 0.52 40.0 2.91e-01 81.6% 79.1%
3420734 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.51 40.0 2.97e-01 85.1% 77.9%
3981185 241.1.1.25 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › PF27378 0.51 46.0 4.16e-01 98.9% 79.1%