RdRp

Euk-Vir

Hubei_permutotetra-like_virus_3

RdRp__YP_009337623__Hubei_permutotetra-like_virus_3__1923077

Identity

71.7 mean pLDDT

View cluster (20 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 320-372_454-521

PDB

Domain cluster: rep: RdRp__YP_009337318__Hubei_permutotetra-like_virus_6__1923080__D328-384_485-539

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF22152.2 best	Permu_RdRp_palm	65.1	7.60e-18	52.9%	17.4%
PF22152.2	Permu_RdRp_palm	37.6	1.70e-09	45.5%	12.9%

D2 high residues 760-900

PDB

D3 medium residues 50-68_114-154_529-626

PDB

Domain cluster: rep: RdRp__YP_009337318__Hubei_permutotetra-like_virus_6__1923080__D29-60_540-665

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF22260.2 best	Permu_RdRp_thumb	116.3	8.80e-34	56.3%	84.5%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3830161	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.50	36.0	3.73e-01	72.2%	88.3%

D4 medium residues 69-113_155-172

PDB

Domain cluster: representative

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1699894	304.48.2.2 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › 'palm' domain in birnaviruse RNA-dependent RNA polymerase › Permu_RdRp_palm	0.92	87.0	4.96e-01	100.0%	19.8%

D5 medium residues 173-306_373-448

PDB

Domain cluster: rep: NIb__YP_009221991__Jasmine_virus_T__1775963__D1-51_64-80_112-210_276-312

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF22152.2 best	Permu_RdRp_palm	202.8	9.80e-60	63.8%	37.0%
PF22152.2	Permu_RdRp_palm	119.7	1.90e-34	37.6%	22.1%