RdRp

Euk-Vir

Sanxia_water_strider_virus_19

RdRp__YP_009337667__Sanxia_water_strider_virus_19__1923403

Identity

65.4 mean pLDDT

View cluster (20 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 791-897

PDB

D2 medium residues 106-118_750-790

PDB

D3 medium residues 119-199_243-321

PDB

Domain cluster: rep: non-structural_protein__YP_003038595__Drosophila_A_virus__595895__D1-30_93-129_206-309

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF22152.2 best	Permu_RdRp_palm	95.3	4.90e-27	73.8%	22.7%

D4 medium residues 200-242_322-341_407-473

PDB

Domain cluster: rep: RdRp__YP_009337300__Hubei_permutotetra-like_virus_1__1923073__D169-204_293-304_366-416

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF22152.2 best	Permu_RdRp_palm	83.2	2.40e-23	54.6%	19.9%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5xfaA04	1.20.1440.230	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain	0.58	27.0	3.30e-01	89.2%	65.9%
6ui4A01	1.20.120.720	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain	0.51	31.0	3.60e-01	76.2%	87.5%
2gkmA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.50	36.0	3.64e-01	73.1%	89.8%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4259516	3018.1.1.0 ↗	a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like	0.55	30.0	3.43e-01	92.3%	72.2%
4579960	3018.1.1.0 ↗	a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like	0.53	33.0	3.82e-01	93.1%	87.4%
3390793	4953.1.1.0 ↗	beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like	0.52	37.0	3.44e-01	70.8%	89.4%
3689786	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.51	35.0	3.21e-01	88.5%	52.9%
4227028	2003.1.5.73 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16	0.50	36.0	2.68e-01	87.7%	28.8%

D5 medium residues 342-406_474-553

PDB

Domain cluster: rep: RdRp__YP_009337318__Hubei_permutotetra-like_virus_6__1923080__D328-384_485-539

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF22152.2 best	Permu_RdRp_palm	65.9	4.30e-18	53.8%	21.3%
PF22152.2	Permu_RdRp_palm	49.1	5.50e-13	45.5%	17.1%

D6 medium residues 554-689

PDB

Domain cluster: rep: RdRp__YP_009337318__Hubei_permutotetra-like_virus_6__1923080__D29-60_540-665

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF22260.2 best	Permu_RdRp_thumb	136.9	3.40e-40	77.2%	100.0%

D7 medium residues 902-942_954-985

PDB