RdRp

Euk-Vir

Hubei_diptera_virus_17

RdRp__YP_009337870__Hubei_diptera_virus_17__1922878

Identity

94.0 mean pLDDT

View cluster (450 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-25_55-73_156-184_245-318

PDB

Domain cluster: rep: RdRp__YP_009337885__Hubei_tetragnatha_maxillosa_virus_8__1923250__D61-84_149-215_309-325

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	35.6	6.70e-09	51.7%	13.1%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2kloA00	1.10.10.1420	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA replication factor Cdt1, C-terminal WH domain	0.56	24.0	2.55e-01	83.0%	40.6%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1699894	304.48.2.2 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › 'palm' domain in birnaviruse RNA-dependent RNA polymerase › Permu_RdRp_palm	0.79	72.0	4.77e-01	96.6%	68.1%
1173784	304.48.1.8 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1	0.74	67.0	4.89e-01	96.6%	78.6%
2994348	304.48.1.9 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1,CoV_RPol_N	0.73	69.0	4.14e-01	100.0%	45.2%
None	—		0.72	66.0	4.81e-01	96.6%	79.0%
3318217	263.1.1.1 ↗	a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF	0.63	24.0	3.24e-01	83.0%	62.5%
4618808	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.51	42.0	3.44e-01	90.5%	48.1%
4915198	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.51	21.0	2.88e-01	70.1%	75.0%
3929906	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.51	41.0	3.44e-01	91.2%	51.0%

D2 medium residues 26-54_402-534

PDB

Domain cluster: rep: RdRp__YP_009333350__Beihai_partiti-like_virus_2__1922504__D1-49_201-221_393-508

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2af7D00	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.53	36.0	4.06e-01	79.6%	91.7%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3530124	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.59	30.0	4.12e-01	79.6%	97.5%

D3 medium residues 74-94_206-244_319-401

PDB

Domain cluster: rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325

D4 medium residues 95-155_185-205

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1zlpA00	3.20.20.60	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains	0.52	40.0	2.85e-01	87.8%	81.7%