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RdRp

Euk-Vir

Hubei_tetragnatha_maxillosa_virus_8

RdRp__YP_009337885__Hubei_tetragnatha_maxillosa_virus_8__1923250

Identity

Accession:: YP_009337885 ↗
Protein ID:: RdRp
Kingdom:: euk

Quality

91.8 mean pLDDT

Cluster

View cluster (450 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 61-84_149-215_309-325

PDB

Domain cluster: representative

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3923013	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.69	54.0	3.74e-01	82.4%	63.5%
3238115	389.1.1.145 ↗	few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › PF29138	0.60	31.0	4.03e-01	97.2%	94.5%

D2 medium residues 85-148_256-308

PDB

Domain cluster: rep: RdRp__YP_009329892__Hubei_diptera_virus_18__1922879__D81-159_189-211_249-288

D3 medium residues 216-255_326-419

PDB

Domain cluster: rep: RdRp__YP_009329875__Hubei_partiti-like_virus_11__1923017__D203-236_315-377

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	24.5	1.50e-05	62.7%	20.4%

D4 medium residues 420-521

PDB

Domain cluster: rep: RdRp__YP_009342458__Wuhan_fly_virus_5__1923699__D417-504

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3oxfA05	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.65	44.0	5.07e-01	89.2%	94.7%
3gw4A00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.63	45.0	3.60e-01	93.1%	38.5%
2wviA00	1.25.40.430	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.63	43.0	3.71e-01	91.2%	44.4%
2gz6A00	1.50.10.10	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase ›	0.62	45.0	3.08e-01	75.5%	94.6%
3qhbA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.61	44.0	3.60e-01	74.5%	55.9%
8amzO01	1.25.40.570	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.61	47.0	3.21e-01	96.1%	24.1%
1cmzA02	1.10.167.10	Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2	0.59	37.0	4.05e-01	83.3%	78.8%
1dk8A02	1.10.167.10	Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2	0.58	39.0	4.22e-01	83.3%	82.4%
4leuA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.57	38.0	3.20e-01	97.1%	37.9%
2jpnA00	1.20.1280.210	Mainly Alpha › Up-down Bundle › Monooxygenase › Uncharacterised protein UvsW.1	0.57	34.0	3.78e-01	85.3%	75.9%
3cqcB02	1.25.40.700	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.55	39.0	4.03e-01	90.2%	78.1%
4y6cA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.53	46.0	3.60e-01	94.1%	52.4%
1zb1A00	1.25.40.280	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains	0.52	47.0	3.14e-01	97.1%	64.6%
3agtA00	1.20.120.50	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like	0.50	40.0	3.66e-01	84.3%	66.2%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3693157	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.60	46.0	4.01e-01	98.0%	54.0%
5072892	601.28.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like	0.60	43.0	4.47e-01	99.0%	80.0%
3802607	109.4.1.1272 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif	0.60	40.0	3.07e-01	96.1%	28.6%
3451438	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.58	44.0	3.81e-01	86.3%	52.7%
3351591	109.4.1.420 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR	0.58	39.0	3.94e-01	96.1%	67.6%
3197507	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.55	39.0	3.36e-01	73.5%	59.5%
3620935	109.4.1.1324 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › P4Ha_N, TPR_P4H	0.54	40.0	3.33e-01	93.1%	44.4%
3273020	109.4.1.2114 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_10, TPR_12, TPR_16	0.52	46.0	3.58e-01	94.1%	54.8%
3881577	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	45.0	4.08e-01	95.1%	83.6%
1822946	109.4.1.292 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › eIF3a_PCI_TPR-like	0.52	43.0	3.47e-01	89.2%	54.7%
3940598	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	38.0	2.89e-01	92.2%	30.9%