←Back to structures

RdRp

Euk-Vir

Wuhan_fly_virus_5

RdRp__YP_009342458__Wuhan_fly_virus_5__1923699

Identity

Accession:: YP_009342458 ↗
Protein ID:: RdRp
Kingdom:: euk

Quality

85.5 mean pLDDT

Taxonomy

Wuhan_fly_virus_5

TaxID: 1923699

Cluster

View cluster (450 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 417-504

PDB

Domain cluster: representative

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3eslA01	1.20.58.2070	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.72	49.0	5.31e-01	71.6%	97.3%
3rmrA01	1.20.5.2710	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.68	44.0	5.05e-01	84.1%	96.6%
2wviA00	1.25.40.430	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.65	44.0	3.67e-01	75.0%	38.7%
3aqbA00	1.20.120.1450	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.64	49.0	4.31e-01	83.0%	77.8%
3zc0D00	1.20.58.2140	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.62	43.0	3.44e-01	73.9%	69.5%
3a8pA02	6.10.140.680	Special › Helix non-globular › Helix Hairpins ›	0.59	45.0	4.19e-01	83.0%	98.2%
3nb2A04	1.10.4140.10	Mainly Alpha › Orthogonal Bundle › effector protein (NleL) fold › effector protein (NleL)	0.59	48.0	3.95e-01	94.3%	98.3%
4b0zA00	1.25.40.990	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.58	47.0	3.55e-01	90.9%	44.9%
3beyD00	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.57	40.0	4.00e-01	92.0%	70.2%
5hvqC01	3.90.1150.220	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 ›	0.57	38.0	3.99e-01	78.4%	76.2%
1aluA00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.57	47.0	3.92e-01	92.0%	65.6%
1w98B02	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.55	44.0	4.11e-01	89.8%	71.9%
2cwqA00	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.54	40.0	3.65e-01	95.5%	55.6%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1007266	3368.1.1.1 ↗	alpha bundles › Rap2b (SMA2266) › Rap2b (SMA2266) › Rap2b (SMA2266) › Tai4	0.76	50.0	4.74e-01	73.9%	58.4%
4663105	109.4.1.1286 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_12	0.66	56.0	4.19e-01	92.0%	58.2%
5023560	180.1.1.0 ↗	alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase	0.63	53.0	4.28e-01	93.2%	93.7%
3530124	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.60	43.0	4.49e-01	75.0%	86.3%
3668677	4133.1.1.1 ↗	alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT	0.60	40.0	4.37e-01	73.9%	87.1%
5019193	608.1.1.1 ↗	alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD	0.57	41.0	3.88e-01	87.5%	62.9%
3578718	101.1.6.0 ↗	alpha arrays › HTH › HTH › TrpR	0.56	39.0	3.87e-01	72.7%	67.4%
4480143	608.1.1.1 ↗	alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD	0.56	40.0	3.78e-01	92.0%	60.0%
4526672	3651.1.1.1 ↗	alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B	0.56	41.0	4.08e-01	79.5%	98.9%
3845130	109.4.1.839 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Maestro_HEAT	0.53	46.0	3.52e-01	98.9%	80.5%
4018806	3718.1.1.0 ↗	alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT	0.53	37.0	3.67e-01	73.9%	71.6%
4864636	7008.1.1.1 ↗	alpha arrays › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › Hex_IIIa	0.52	33.0	3.23e-01	70.5%	56.7%
4594470	3651.1.1.1 ↗	alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B	0.52	43.0	3.72e-01	93.2%	70.7%
5049515	101.1.2.101 ↗	alpha arrays › HTH › HTH › winged helix domain › Cdc6_C	0.51	41.0	3.80e-01	89.8%	76.5%
4964621	608.1.1.1 ↗	alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD	0.50	39.0	3.62e-01	96.6%	65.2%

D2 medium residues 23-36_92-182_200-226_269-327

PDB

Domain cluster: rep: RdRp__YP_009329892__Hubei_diptera_virus_18__1922879__D81-159_189-211_249-288

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	30.5	2.30e-07	46.6%	12.2%

D3 medium residues 37-91_183-199

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6fgjA01	3.30.460.10	Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2	0.54	42.0	3.40e-01	87.5%	90.7%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3301272	145.1.1.3 ↗	alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like	0.79	32.0	2.70e-01	76.4%	24.5%

D4 medium residues 227-268_328-416

PDB

Domain cluster: rep: RdRp__YP_009329875__Hubei_partiti-like_virus_11__1923017__D203-236_315-377

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	31.8	9.40e-08	64.9%	20.7%