RdRp

Euk-Vir

Xingshan_nematode_virus_5

RdRp__YP_009345118__Xingshan_nematode_virus_5__1923764

Identity

91.5 mean pLDDT

View cluster (25 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 51-101_412-478

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1wp9B03	1.20.1320.20	Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › hef helicase domain	0.54	43.0	4.23e-01	85.6%	93.1%
5jajA03	1.20.1320.30	Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 ›	0.52	41.0	4.20e-01	84.7%	95.7%
3iq1B00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.52	38.0	3.46e-01	84.7%	57.2%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4387475	601.3.1.1 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt	0.62	32.0	3.14e-01	72.9%	45.6%
3433100	109.4.1.420 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR	0.55	48.0	4.25e-01	93.2%	71.5%
3347410	109.4.1.189 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2	0.52	43.0	4.11e-01	88.1%	88.9%
3999128	544.1.1.0 ↗	alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18	0.51	39.0	4.11e-01	84.7%	90.5%

D2 medium residues 102-126_219-249_275-314

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009330084__Hubei_sobemo-like_virus_29__1923215__D69-99_124-141_234-267

D3 medium residues 127-218_315-337

PDB

Domain cluster: rep: NIa__YP_003620390__Freesia_mosaic_virus__421012__D109-224

D4 medium residues 250-274_338-411

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181