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RdRp

Euk-Vir

Wuhan_cricket_virus_2

RdRp__YP_009345133__Wuhan_cricket_virus_2__1923697

Identity

Accession:: YP_009345133 ↗
Protein ID:: RdRp
Kingdom:: euk

Quality

93.9 mean pLDDT

Cluster

View cluster (450 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 34-60_412-497

PDB

Domain cluster: rep: RdRp__YP_009342458__Wuhan_fly_virus_5__1923699__D417-504

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gz6A00	1.50.10.10	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase ›	0.60	42.0	2.98e-01	72.6%	95.2%
2fzfA01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.60	44.0	3.94e-01	75.2%	82.7%
2gfnA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.59	46.0	3.88e-01	83.2%	87.5%
4kwaB00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.58	42.0	3.53e-01	74.3%	86.5%
2lseA00	1.20.120.1360	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.58	45.0	4.70e-01	93.8%	92.1%
3ce9A02	1.20.1090.10	Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain	0.57	51.0	4.28e-01	100.0%	91.8%
4bwrA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.56	45.0	2.99e-01	85.8%	30.4%
4r42A01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.56	40.0	3.44e-01	75.2%	73.3%
1u89A00	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.55	41.0	3.89e-01	79.6%	96.4%
5k7fA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.55	39.0	3.65e-01	73.5%	79.0%
2q58B00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.55	46.0	3.40e-01	95.6%	70.5%
2lqgA00	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.52	38.0	3.57e-01	75.2%	94.9%
3llwD00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.52	46.0	3.43e-01	97.3%	76.8%
2b6cA02	1.25.40.290	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat domains	0.50	35.0	3.70e-01	84.1%	83.5%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3622768	101.1.10.13 ↗	alpha arrays › HTH › HTH › Cyclin-like › DUF3452	0.65	55.0	5.56e-01	100.0%	90.4%
3405290	4207.1.2.82 ↗	alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › PF27645	0.65	41.0	3.96e-01	75.2%	56.8%
4443691	650.1.1.0 ↗	alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain	0.63	32.0	3.76e-01	71.7%	68.8%
3488467	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.62	50.0	5.06e-01	94.7%	87.0%
3778682	150.1.1.24 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Prominin	0.59	42.0	3.93e-01	74.3%	68.6%
3543833	3758.1.1.57 ↗	alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › Prominin	0.59	42.0	3.05e-01	74.3%	56.1%
3849174	601.19.1.37 ↗	alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Prominin	0.58	42.0	3.29e-01	74.3%	63.9%
5053233	101.1.4.0 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like	0.58	42.0	4.68e-01	75.2%	100.0%
3731618	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.54	38.0	3.24e-01	74.3%	86.8%
3994425	109.4.1.1312 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30475	0.53	39.0	3.70e-01	78.8%	81.4%
3290056	109.3.1.160 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › EccD	0.52	36.0	3.14e-01	70.8%	88.2%
4018106	109.4.1.356 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans	0.52	45.0	3.45e-01	96.5%	65.7%
3547079	150.3.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine	0.50	40.0	3.87e-01	94.7%	75.4%

D2 medium residues 16-31_61-84_306-325

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2oxaA01	3.40.50.200	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain	0.50	35.0	2.20e-01	76.7%	38.8%

D3 medium residues 85-117_185-213_252-305

PDB

Domain cluster: rep: RdRp__YP_009329892__Hubei_diptera_virus_18__1922879__D81-159_189-211_249-288

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3q5dA02	1.20.58.420	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP	0.53	36.0	3.92e-01	82.8%	83.5%
4l3uA00	1.20.1480.40	Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Uncharacterised protein PF16133, DUF4844	0.52	36.0	3.57e-01	70.7%	82.1%
6fhpD00	1.10.390.10	Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2	0.51	27.0	3.36e-01	75.0%	90.3%
2pkeA02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.50	33.0	3.93e-01	70.7%	100.0%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5055517	4953.1.1.0 ↗	beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like	0.57	40.0	3.78e-01	71.6%	92.1%
4384163	2003.1.10.2 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Dala_Dala_lig_N	0.55	31.0	2.99e-01	85.3%	45.2%
3752694	621.1.1.0 ↗	alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain	0.53	36.0	3.05e-01	81.9%	42.6%
4146962	3187.1.1.24 ↗	alpha bundles › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein › CC_Cfap43	0.51	36.0	3.69e-01	80.2%	73.9%
3940198	6126.1.1.0 ↗	alpha bundles › Helical domain in EHD2 › Helical domain in EHD2 › Helical domain in EHD2	0.51	31.0	3.08e-01	79.3%	55.2%
4051167	106.1.1.1 ↗	alpha arrays › Globin-like › Globin-like › Globin-like › Globin	0.51	38.0	3.56e-01	80.2%	89.9%

D4 medium residues 118-184

PDB

Domain cluster: rep: 66_kDa_protein__YP_009182157__Penicillium_aurantiogriseum_partiti-like_virus_Viruses.__X__D110-159

D5 medium residues 214-251_326-402_522-541

PDB

Domain cluster: rep: RdRp__YP_009329875__Hubei_partiti-like_virus_11__1923017__D203-236_315-377

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	30.1	3.10e-07	71.9%	18.2%