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RdRp
Euk-VirAedes_camptorhynchus_toti-like_virus_1_Viruses.
RdRp__YP_009388611__Aedes_camptorhynchus_toti-like_virus_1_Viruses.__X
Identity
- Accession:
- YP_009388611 ↗
- Protein ID:
- RdRp
- Kingdom:
- euk
Quality
91.2
mean pLDDT
Cluster
View cluster (16 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 43-70_155-242
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4jgiA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.67 | 32.0 | 3.79e-01 | 79.3% | 63.7% |
| 2kckA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.62 | 33.0 | 3.40e-01 | 98.3% | 51.8% |
| 1i5nB00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.58 | 36.0 | 3.55e-01 | 100.0% | 57.3% |
| 5ts9B00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.55 | 43.0 | 3.92e-01 | 85.3% | 98.8% |
| 2i0mA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.54 | 34.0 | 3.60e-01 | 83.6% | 68.9% |
| 2pn5A09 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.52 | 31.0 | 2.36e-01 | 97.4% | 23.0% |
| 2hroA02 | 1.10.274.10 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain | 0.52 | 42.0 | 4.11e-01 | 87.1% | 89.8% |
| 6fdpA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 28.0 | 2.83e-01 | 92.2% | 51.7% |
| 3k1rA01 | 1.20.1160.20 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › | 0.51 | 34.0 | 3.93e-01 | 96.6% | 100.0% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4170329 | 605.1.1.158 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › PsiE | 0.64 | 42.0 | 4.04e-01 | 100.0% | 59.2% |
| 3399981 | 109.4.1.1666 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_10 | 0.61 | 33.0 | 3.02e-01 | 97.4% | 38.7% |
| 4438308 | 5069.1.3.47 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › PsiE | 0.60 | 44.0 | 4.34e-01 | 100.0% | 70.4% |
| 3347780 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.58 | 41.0 | 3.54e-01 | 74.1% | 90.3% |
| 3959667 | 1174.1.1.0 ↗ | alpha complex topology › Potassium channel TMEM175 › Potassium channel TMEM175 › Potassium channel TMEM175 | 0.55 | 44.0 | 3.70e-01 | 100.0% | 51.1% |
| 3811350 | 109.4.1.1277 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, TPR_24 | 0.54 | 29.0 | 2.77e-01 | 97.4% | 40.7% |
| 4973614 | 5069.1.3.26 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › DUF1622 | 0.53 | 42.0 | 4.33e-01 | 99.1% | 88.2% |
D2
medium
residues 71-154
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rtqA00 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.63 | 53.0 | 3.63e-01 | 91.7% | 85.2% |
| 4rr5A02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.56 | 36.0 | 3.99e-01 | 98.8% | 85.9% |
| 2oi2A02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.55 | 38.0 | 3.30e-01 | 96.4% | 44.8% |
| 2kkhA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 37.0 | 3.91e-01 | 100.0% | 78.7% |
| 5zneA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 38.0 | 3.97e-01 | 100.0% | 83.6% |
| 2h1yA02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.54 | 36.0 | 3.92e-01 | 100.0% | 82.9% |
| 2fywA02 | 3.40.1390.30 | Alpha Beta › 3-Layer(aba) Sandwich › Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 › NIF3 (NGG1p interacting factor 3)-like | 0.54 | 41.0 | 3.69e-01 | 84.5% | 96.8% |
| 2a2cA02 | 3.30.70.3170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 36.0 | 3.70e-01 | 100.0% | 71.4% |
| 1j5yA02 | 3.30.1340.20 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain | 0.53 | 39.0 | 3.62e-01 | 78.6% | 87.9% |
| 2ckoA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.52 | 43.0 | 3.08e-01 | 91.7% | 79.1% |
| 2kjwA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.52 | 41.0 | 4.01e-01 | 90.5% | 78.1% |
| 3v2uC02 | 3.30.70.3170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 40.0 | 3.91e-01 | 98.8% | 77.9% |
| 2hjjA00 | 3.30.160.130 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains | 0.52 | 34.0 | 3.69e-01 | 79.8% | 84.8% |
| 3onqA02 | 3.30.70.2730 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 37.0 | 3.83e-01 | 94.0% | 82.7% |
| 2efpA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.51 | 38.0 | 3.67e-01 | 95.2% | 69.4% |
| 3ayjA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 42.0 | 2.84e-01 | 95.2% | 39.1% |
| 1s7hA01 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 37.0 | 3.80e-01 | 96.4% | 82.5% |
| 1rlhA02 | 3.40.1520.10 | Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › Ta1353-like | 0.50 | 44.0 | 4.13e-01 | 96.4% | 90.1% |
| 2l3mA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 33.0 | 3.54e-01 | 78.6% | 80.3% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3218711 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.59 | 43.0 | 4.06e-01 | 78.6% | 73.3% |
| 3340888 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.56 | 37.0 | 4.05e-01 | 78.6% | 86.2% |
| 137913 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.56 | 38.0 | 3.65e-01 | 98.8% | 61.1% |
| 3359944 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.56 | 35.0 | 4.08e-01 | 98.8% | 96.4% |
| 5031939 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.56 | 38.0 | 3.94e-01 | 96.4% | 76.2% |
| 3250106 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.55 | 38.0 | 3.94e-01 | 100.0% | 80.0% |
| 3645069 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.55 | 38.0 | 3.89e-01 | 98.8% | 76.2% |
| 3735687 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.54 | 35.0 | 3.81e-01 | 98.8% | 81.4% |
| 3309248 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.54 | 38.0 | 3.99e-01 | 100.0% | 84.0% |
| 5047370 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.53 | 36.0 | 3.88e-01 | 98.8% | 84.3% |
| 5061624 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.53 | 36.0 | 4.06e-01 | 100.0% | 98.3% |
| 4944912 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.53 | 36.0 | 3.88e-01 | 98.8% | 84.3% |
| 3303285 | 221.4.1.24 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX, DUF4743 | 0.53 | 38.0 | 2.65e-01 | 76.2% | 48.6% |
| 4972700 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.53 | 36.0 | 3.83e-01 | 100.0% | 80.0% |
| 4938565 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.53 | 38.0 | 3.80e-01 | 88.1% | 72.2% |
| 135996 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.53 | 37.0 | 3.86e-01 | 100.0% | 82.4% |
| 3207480 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.53 | 37.0 | 3.85e-01 | 96.4% | 78.8% |
| 3651506 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.53 | 36.0 | 3.91e-01 | 100.0% | 87.1% |
| 4943937 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.53 | 35.0 | 3.79e-01 | 98.8% | 87.7% |
| 5000033 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.52 | 37.0 | 3.80e-01 | 97.6% | 78.8% |
| 5074053 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.52 | 38.0 | 3.60e-01 | 97.6% | 62.9% |
| 5058872 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.52 | 35.0 | 3.55e-01 | 78.6% | 71.2% |
| 3507110 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.52 | 36.0 | 3.74e-01 | 100.0% | 77.5% |
| 3174921 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.52 | 37.0 | 3.82e-01 | 97.6% | 80.0% |
| 3558890 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.51 | 36.0 | 3.68e-01 | 97.6% | 74.1% |
| 3891992 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.51 | 36.0 | 3.73e-01 | 96.4% | 78.8% |
| 4975345 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.51 | 35.0 | 3.80e-01 | 78.6% | 87.1% |
| 5039105 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.51 | 35.0 | 3.67e-01 | 100.0% | 80.0% |
| 3933193 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.51 | 35.0 | 3.77e-01 | 98.8% | 87.1% |
| 4928600 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.51 | 35.0 | 3.77e-01 | 100.0% | 87.1% |
| 4321638 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.51 | 35.0 | 3.68e-01 | 100.0% | 82.4% |
| 4973396 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.50 | 44.0 | 3.50e-01 | 100.0% | 64.4% |
| 3350503 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.50 | 36.0 | 3.68e-01 | 100.0% | 77.6% |
| 142006 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.50 | 33.0 | 3.54e-01 | 78.6% | 80.3% |
| 5028447 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.50 | 38.0 | 3.72e-01 | 92.9% | 75.3% |
| 4258303 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.50 | 34.0 | 3.59e-01 | 97.6% | 80.0% |
D3
medium
residues 243-282_294-395_437-502
Domain cluster:
rep: hypothetical_protein_2__YP_009336713__Beihai_toti-like_virus_4__1922734__D167-187_213-323_360-427
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02123.22 best | RdRP_4 | 39.9 | 3.60e-10 | 69.2% | 30.8% |
D4
medium
residues 283-293_396-436_503-588
Domain cluster:
rep: RNA-dependent_RNA_polymerase__YP_009342440__Wuhan_insect_virus_18__1923722__D388-416_481-565_595-607
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02123.22 best | RdRP_4 | 35.1 | 1.00e-08 | 79.0% | 16.6% |
D5
medium
residues 589-674
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1mukA02 | 3.90.1850.10 | Alpha Beta › Alpha-Beta Complex › RNA-directed RNA polymerase lambda-3 › RNA-directed RNA polymerase lambda-3 | 0.76 | 66.0 | 4.03e-01 | 95.3% | 16.7% |
| 3b9qA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.64 | 42.0 | 4.20e-01 | 70.9% | 64.0% |
| 4adnA01 | 1.20.1280.250 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.61 | 42.0 | 4.26e-01 | 70.9% | 71.8% |
| 1vb5A01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.59 | 49.0 | 4.76e-01 | 93.0% | 100.0% |
| 1sxjE03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.58 | 40.0 | 3.93e-01 | 73.3% | 75.3% |
| 2bgcA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 38.0 | 3.61e-01 | 70.9% | 60.4% |
| 2v6eA04 | 1.10.10.2040 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.55 | 35.0 | 3.47e-01 | 87.2% | 59.1% |
| 2d9dA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.54 | 42.0 | 4.19e-01 | 83.7% | 91.0% |
| 3beyD00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.53 | 35.0 | 3.48e-01 | 73.3% | 62.8% |
| 3mczA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 30.0 | 3.14e-01 | 84.9% | 58.5% |
| 4wqoD00 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.52 | 39.0 | 3.44e-01 | 83.7% | 98.6% |
| 2hkeA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.52 | 44.0 | 3.39e-01 | 94.2% | 71.9% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3547406 | 604.1.1.153 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF4455 | 0.69 | 54.0 | 4.20e-01 | 82.6% | 85.1% |
| 4883892 | 4967.1.1.32 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Bunya_RdRp | 0.66 | 52.0 | 5.20e-01 | 87.2% | 82.0% |
| 4858176 | 304.48.1.19 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Bunya_RdRp | 0.65 | 51.0 | 5.10e-01 | 87.2% | 82.0% |
| 5074539 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 39.0 | 4.20e-01 | 80.2% | 81.4% |
| 488142 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.59 | 44.0 | 4.24e-01 | 81.4% | 77.5% |
| 5049987 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 40.0 | 3.78e-01 | 75.6% | 61.9% |
| 5044829 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 38.0 | 3.70e-01 | 72.1% | 64.0% |
| 3630542 | 109.4.1.264 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RMD1-3 | 0.54 | 44.0 | 4.07e-01 | 90.7% | 70.9% |
| 3489856 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 33.0 | 3.43e-01 | 72.1% | 66.3% |
| None | — | 0.52 | 43.0 | 2.72e-01 | 93.0% | 17.3% | |
| 5021422 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.51 | 31.0 | 3.46e-01 | 86.0% | 78.5% |
| 3392763 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 37.0 | 3.72e-01 | 77.9% | 77.6% |
D6
medium
residues 791-955
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4jgiA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.56 | 25.0 | 3.40e-01 | 98.2% | 81.2% |
| 1jr3C02 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.54 | 34.0 | 3.89e-01 | 78.8% | 84.4% |
| 7e4nA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.54 | 45.0 | 3.80e-01 | 90.3% | 70.1% |
| 7shlA02 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.52 | 28.0 | 3.14e-01 | 100.0% | 66.4% |
| 1aueB00 | 1.20.120.150 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › FKBP12-rapamycin binding domain | 0.51 | 27.0 | 3.35e-01 | 78.2% | 85.1% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5059222 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.54 | 31.0 | 3.54e-01 | 77.0% | 73.3% |
| 3969017 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.53 | 29.0 | 3.23e-01 | 72.1% | 65.4% |
| 5048002 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.51 | 26.0 | 2.85e-01 | 77.0% | 56.3% |
| 4968261 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.50 | 29.0 | 3.27e-01 | 74.5% | 72.0% |