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RdRp
Euk-VirAedes_camptorhynchus_reo-like_virus_Viruses.
RdRp__YP_009389547__Aedes_camptorhynchus_reo-like_virus_Viruses.__X
Identity
- Accession:
- YP_009389547 ↗
- Protein ID:
- RdRp
- Kingdom:
- euk
Quality
65.5
mean pLDDT
Cluster
View cluster (29 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-67_923-940
D2
medium
residues 68-121
Domain cluster:
representative
D3
medium
residues 206-294
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF27669.1 best | RNA-dir_pol_phytoreovirus | 46.6 | 1.30e-12 | 100.0% | 5.9% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1e6dM01 | 1.20.85.10 | Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like | 0.59 | 44.0 | 3.77e-01 | 78.7% | 60.8% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.56 | 43.0 | 3.63e-01 | 83.1% | 99.3% |
| 3tbiB02 | 6.10.140.1670 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 41.0 | 4.01e-01 | 82.0% | 76.0% |
| 1zvuA03 | 1.10.268.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 | 0.52 | 39.0 | 3.39e-01 | 80.9% | 75.7% |
| 3gcgB00 | 1.10.4120.20 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › | 0.51 | 40.0 | 3.47e-01 | 88.8% | 72.4% |
| 3u7rA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.50 | 43.0 | 3.44e-01 | 95.5% | 90.1% |
| 1yf2A02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.50 | 37.0 | 3.55e-01 | 78.7% | 66.4% |
| 4mlaA03 | 3.40.462.10 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain | 0.50 | 42.0 | 3.14e-01 | 92.1% | 41.3% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4133194 | 604.27.1.0 ↗ | alpha bundles › Spectrin repeat-like › Triple-helical domain in insecticidal protein Cry1Ac › Triple-helical domain in insecticidal protein Cry1Ac | 0.59 | 32.0 | 3.22e-01 | 77.5% | 49.5% |
| 4874340 | 5054.1.1.1 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lig_chan | 0.55 | 43.0 | 4.06e-01 | 84.3% | 81.1% |
| 3932293 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.55 | 46.0 | 4.06e-01 | 97.8% | 72.9% |
| 3638435 | 1073.1.1.14 ↗ | alpha arrays › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › LMBR1 | 0.54 | 40.0 | 3.69e-01 | 77.5% | 75.4% |
| 3251160 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.54 | 40.0 | 3.90e-01 | 78.7% | 83.0% |
| 3258057 | 3324.1.1.2 ↗ | extended segments › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases | 0.52 | 37.0 | 3.32e-01 | 75.3% | 85.4% |
| 3720255 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.52 | 43.0 | 3.86e-01 | 95.5% | 96.2% |
| 3205253 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.51 | 37.0 | 2.97e-01 | 75.3% | 38.8% |
| 3550987 | 4207.1.1.1 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › Med21 | 0.51 | 35.0 | 3.05e-01 | 77.5% | 46.7% |
| 3993970 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.51 | 39.0 | 2.59e-01 | 83.1% | 74.4% |
| 4940643 | 1079.1.1.0 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA | 0.51 | 43.0 | 3.24e-01 | 94.4% | 93.8% |
| 4032209 | 3758.1.1.4 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › TelA | 0.50 | 37.0 | 2.98e-01 | 76.4% | 71.5% |
D4
medium
residues 325-346_370-443
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qyuA02 | 1.25.40.300 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein | 0.56 | 35.0 | 2.79e-01 | 76.0% | 29.7% |
| 1vb5A01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.53 | 35.0 | 3.59e-01 | 96.9% | 70.2% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3637724 | 149.1.1.0 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 | 0.57 | 46.0 | 2.97e-01 | 85.4% | 40.5% |
| 3675734 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.53 | 35.0 | 3.47e-01 | 89.6% | 65.0% |
| 3267469 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 29.0 | 2.95e-01 | 84.4% | 56.8% |
D5
medium
residues 347-369_649-702_770-867
D6
medium
residues 625-648_703-732
Domain cluster:
representative
D7
medium
residues 941-1038_1059-1122
D8
medium
residues 1147-1210_1277-1345
D9
medium
residues 1211-1276