RdRp

Euk-Vir

Strawberry_necrotic_shock_virus

RdRp__YP_941472__Strawberry_necrotic_shock_virus__243563

Identity

67.9 mean pLDDT

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Bromoviridae› Ilarvirus› Strawberry_necrotic_shock_virus

TaxID: 243563

View cluster (23 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 614-718

PDB

Domain cluster: rep: p2_protein__YP_002308570__Blackberry_chlorotic_ringspot_virus__339420__D627-719

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	38.2	1.20e-09	70.5%	17.3%

D2 medium residues 1-72

PDB

D3 medium residues 220-248_271-313

PDB

Domain cluster: rep: 2a_protein__YP_002640501__Gayfeather_mild_mottle_virus__578305__D283-311_333-372

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	41.7	1.00e-10	77.8%	10.4%

D4 medium residues 314-436_466-545

PDB

Domain cluster: rep: hypothetical_protein_3__YP_009345007__Wuhan_spider_virus_8__1923757__D1-105_147-200

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	104.0	1.30e-29	60.6%	28.4%
PF00978.27	RdRP_2	118.8	4.10e-34	40.9%	18.6%

D5 medium residues 437-465_546-613

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	62.6	4.70e-17	68.0%	12.7%