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Rep78

Euk-Vir

California_sea_lion_adeno-associated_virus_1

Rep78__YP_009507366__California_sea_lion_adeno-associated_virus_1__1073950

Identity

Accession:
YP_009507366 ↗
Protein ID:
Rep78
Kingdom:
euk

Quality

83.1 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Quintoviricetes› Piccovirales› Parvoviridae› Dependoparvovirus› California_sea_lion_adeno-associated_virus_1

TaxID: 1073950

Cluster

View cluster (29 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-197
PDB
Domain cluster: rep: NS1__YP_009507375__Chipmunk_parvovirus__56820__D1-203
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08724.17 best Rep_N 224.4 1.40e-66 97.4% 99.5%
D2 high residues 324-476
PDB
Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF01057.24 best Parvo_NS1 277.5 1.20e-82 100.0% 56.1%
PF00519.24 PPV_E1_C 26.9 3.80e-06 77.1% 35.6%
PF19263.6 DUF5906 28.5 2.90e-06 70.6% 91.1%
D3 medium residues 220-277
PDB
Domain cluster: rep: Rep_68_protein__YP_680422__adeno-associated_virus_2__10804__D219-282
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01057.24 best Parvo_NS1 58.6 7.00e-16 100.0% 20.7%
D4 medium residues 538-600
PDB