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RepA
Euk-VirSporobolus_striate_mosaic_virus_2
RepA__YP_006666532__Sporobolus_striate_mosaic_virus_2__1302850
Identity
- Accession:
- YP_006666532 ↗
- Protein ID:
- RepA
- Kingdom:
- euk
Quality
80.6
mean pLDDT
Taxonomy
Shotokuvirae›
Cressdnaviricota›
Repensiviricetes›
Geplafuvirales›
Geminiviridae›
Mastrevirus›
Sporobolus_striate_mosaic_virus_2
TaxID: 1302850
Cluster
View cluster (34 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-117
Domain cluster:
rep: replication_associated_protein__YP_008472704__Chickpea_chlorosis_Australia_virus__1302848__D15-112
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00799.27 best | Gemini_AL1 | 89.8 | 1.60e-25 | 100.0% | 92.9% |
D2
medium
residues 129-178
Domain cluster:
rep: replication_associated_protein__YP_006331073__Maize_streak_Reunion_virus__1182518__D173-216
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08283.17 best | Gemini_AL1_M | 41.1 | 2.20e-10 | 98.0% | 42.1% |
D3
medium
residues 192-244
Domain cluster:
rep: RepA__YP_009021764__Axonopus_compressus_streak_virus__1476487__D223-269
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cqnA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.59 | 42.0 | 3.79e-01 | 77.4% | 55.8% |
| 3fewX02 | 3.30.1310.40 | Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › | 0.59 | 45.0 | 3.74e-01 | 83.0% | 70.5% |
| 5im4F00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.58 | 46.0 | 3.45e-01 | 86.8% | 86.3% |
| 3g36B00 | 1.20.890.10 | Mainly Alpha › Up-down Bundle › cAMP-dependent Protein Kinase, Chain A › cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain | 0.58 | 45.0 | 4.63e-01 | 88.7% | 90.2% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4968422 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.59 | 43.0 | 2.97e-01 | 83.0% | 73.2% |
| 4012511 | 103.12.1.5 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › GCR1_C | 0.54 | 40.0 | 3.45e-01 | 86.8% | 51.0% |