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RepA

Euk-Vir

Pteropus_associated_gemycircularvirus_6

RepA__YP_009506611__Pteropus_associated_gemycircularvirus_6__1985400

Identity

Accession:
YP_009506611 ↗
Protein ID:
RepA
Kingdom:
euk

Quality

70.2 mean pLDDT

Taxonomy

Shotokuvirae› Cressdnaviricota› Repensiviricetes› Geplafuvirales› Genomoviridae› Gemycircularvirus› Pteropus_associated_gemycircularvirus_6

TaxID: 1985400

Cluster

View cluster (48 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-104
PDB
Domain cluster: rep: RepA__YP_009252354__Faeces_associated_gemycircularvirus_20__1843740__D6-101
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00799.27 best Gemini_AL1 29.2 1.10e-06 68.4% 58.4%
D2 medium residues 120-160
PDB
Domain cluster: rep: replication_associated_protein__YP_009252359__Faeces_associated_gemycircularvirus_18__1843738__D117-157
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 52.0 4.12e-01 80.5% 34.1%
5x68A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.70 58.0 3.42e-01 97.6% 16.4%
1vtnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 53.0 4.20e-01 100.0% 50.0%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 53.0 4.36e-01 97.6% 57.1%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.65 52.0 4.27e-01 100.0% 69.7%
3n4eA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.63 49.0 3.91e-01 100.0% 44.2%
1xx7A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.63 51.0 3.44e-01 95.1% 66.9%
3b5iA02 1.10.1200.220 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.62 49.0 3.98e-01 100.0% 84.2%
1bqbA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.61 51.0 3.60e-01 100.0% 36.1%
2yjgA01 3.90.226.30 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › LarA, C-terminal domain 0.59 47.0 3.08e-01 87.8% 25.4%
2p35A02 1.10.150.290 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › S-adenosyl-L-methionine-dependent methyltransferases 0.59 45.0 4.10e-01 100.0% 95.7%
1lp1A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.59 41.0 3.93e-01 80.5% 60.0%
3ephA02 1.10.20.140 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.59 46.0 3.99e-01 92.7% 56.9%
2p6rA03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.58 46.0 3.02e-01 97.6% 19.7%
2khvA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.56 43.0 3.66e-01 100.0% 54.1%
2vfrA05 1.10.45.10 Mainly Alpha › Orthogonal Bundle › Vanillyl-alcohol Oxidase; Chain A, domain 4 › Vanillyl-alcohol Oxidase; Chain A, domain 4 0.55 37.0 3.86e-01 70.7% 73.7%
2mbgA01 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.55 44.0 2.97e-01 100.0% 65.8%
7crnA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 45.0 2.82e-01 97.6% 60.3%
2uvaG01 1.20.1050.120 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 44.0 3.19e-01 100.0% 44.1%
2x24A03 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.51 40.0 2.41e-01 82.9% 10.9%
2qkdA02 2.60.120.1040 Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain 0.51 43.0 3.01e-01 97.6% 36.4%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3221566 101.1.2.303 ↗ alpha arrays › HTH › HTH › winged helix domain › RPC5 0.70 55.0 4.50e-01 100.0% 44.7%
344114 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.69 57.0 4.19e-01 100.0% 39.5%
2939404 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.68 57.0 5.27e-01 100.0% 89.3%
4939370 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 51.0 4.10e-01 100.0% 50.0%
3810002 101.1.2.111 ↗ alpha arrays › HTH › HTH › winged helix domain › RQC 0.65 51.0 3.96e-01 100.0% 51.8%
3313980 101.1.2.252 ↗ alpha arrays › HTH › HTH › winged helix domain › OHA 0.64 55.0 4.31e-01 100.0% 57.8%
3806070 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.64 48.0 4.74e-01 100.0% 94.0%
4173843 532.2.1.1 ↗ alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › HrpJ 0.62 51.0 3.81e-01 95.1% 60.0%
2491869 103.7.1.1 ↗ alpha arrays › RuvA-C › Hypothetical protein MTH1615 › Hypothetical protein MTH1615 › dsDNA_bind 0.61 43.0 3.70e-01 78.0% 58.3%
5048562 2500.1.1.4 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › DUF711 0.60 51.0 2.92e-01 100.0% 9.6%
5002258 109.7.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E 0.56 45.0 3.79e-01 100.0% 56.2%
4014303 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 45.0 2.69e-01 95.1% 93.9%