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RepA

Euk-Vir

Passion_fruit_chlorotic_mottle_virus

RepA__YP_009553197__Passion_fruit_chlorotic_mottle_virus__2162638

Identity

Accession:: YP_009553197 ↗
Protein ID:: RepA
Kingdom:: euk

Quality

75.8 mean pLDDT

Taxonomy

Shotokuvirae› Cressdnaviricota› Repensiviricetes› Geplafuvirales› Geminiviridae› Citlodavirus› Passion_fruit_chlorotic_mottle_virus

TaxID: 2162638

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-115

PDB

Domain cluster: rep: replication-associated_protein__YP_009553348__Odonata-associated_circular_virus-7_Viruses.__X__D5-106

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00799.27 best	Gemini_AL1	74.7	8.50e-21	100.0%	92.9%

D2 medium residues 128-173

PDB

Domain cluster: rep: replication_associated_protein__YP_009109715__Faeces_associated_gemycircularvirus_12__1391027__D123-167

D3 medium residues 191-240

PDB

Domain cluster: representative

CATH (17)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4ociA02	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.67	48.0	4.28e-01	78.0%	78.1%
2k2aA00	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.65	48.0	4.35e-01	80.0%	75.7%
2bl0B01	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.64	50.0	4.62e-01	90.0%	76.5%
2k7bA00	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.64	47.0	4.27e-01	86.0%	72.4%
3a8rA01	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.63	47.0	3.73e-01	84.0%	57.5%
5w1aB02	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.62	45.0	4.28e-01	84.0%	83.1%
4d1eA04	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.62	41.0	3.80e-01	70.0%	71.6%
1tizA00	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.61	44.0	4.16e-01	84.0%	82.1%
1ij5A03	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.60	44.0	3.43e-01	84.0%	43.5%
1wu7A02	3.30.240.30	Alpha Beta › 2-Layer Sandwich › CRO Repressor ›	0.60	40.0	3.95e-01	70.0%	76.4%
1hqvA00	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.59	42.0	3.06e-01	84.0%	33.1%
1el4A00	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.58	43.0	2.97e-01	84.0%	35.1%
5vt9B01	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.57	42.0	3.88e-01	88.0%	79.5%
4wriA00	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.53	40.0	2.85e-01	88.0%	37.4%
6pw7A01	1.10.238.180	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 ›	0.51	37.0	3.40e-01	84.0%	73.3%
3e3rA02	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.50	36.0	3.09e-01	84.0%	98.0%
1rifA01	3.30.780.20	Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 ›	0.50	36.0	3.17e-01	84.0%	75.6%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3934817	108.1.1.16 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand › EFhand_Ca_insen	0.67	45.0	4.08e-01	70.0%	71.0%
1557040	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.64	49.0	4.15e-01	90.0%	75.3%
4969004	5067.1.1.0 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain	0.59	40.0	2.23e-01	70.0%	14.1%
3056058	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.58	41.0	3.70e-01	80.0%	53.2%
3268448	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.56	38.0	3.09e-01	72.0%	82.9%
3056093	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.55	39.0	3.56e-01	80.0%	57.3%
4991762	101.1.2.643 ↗	alpha arrays › HTH › HTH › winged helix domain › AAA_assoc_C	0.53	36.0	3.23e-01	70.0%	68.0%
3237866	3265.1.1.1 ↗	alpha arrays › C-terminal helical domain in tRNA modifying enzyme GidA › C-terminal helical domain in tRNA modifying enzyme GidA › C-terminal helical domain in tRNA modifying enzyme GidA › GIDA_C_1st	0.53	37.0	3.28e-01	80.0%	49.4%
2166039	108.1.1.97 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7	0.51	37.0	3.06e-01	84.0%	61.3%
3905735	101.1.2.94 ↗	alpha arrays › HTH › HTH › winged helix domain › ANAPC2	0.50	36.0	3.07e-01	84.0%	45.9%