←Back to structures

RepA

Euk-Vir

Eleusine_indica_associated_virus

RepA__YP_010087740__Eleusine_indica_associated_virus__2596881

Identity

Accession:
YP_010087740 ↗
Protein ID:
RepA
Kingdom:
euk

Quality

72.9 mean pLDDT

Taxonomy

Shotokuvirae› Cressdnaviricota› Repensiviricetes› Geplafuvirales› Geminiviridae› Mastrevirus› Eleusine_indica_associated_virus

TaxID: 2596881

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 169-214
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.74 62.0 5.02e-01 93.5% 83.9%
1zhxA02 1.10.287.2720 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 58.0 4.72e-01 89.1% 57.5%
1stzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 48.0 3.92e-01 71.7% 38.8%
3qldA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.68 47.0 3.28e-01 82.6% 22.4%
2hyjA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.68 56.0 4.05e-01 100.0% 32.7%
2fupA00 1.20.58.300 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FlgN-like 0.66 48.0 3.42e-01 80.4% 27.6%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.66 54.0 4.17e-01 89.1% 42.7%
4dsfA04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.64 54.0 4.18e-01 100.0% 89.1%
2hdoA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 43.0 3.94e-01 76.1% 50.0%
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.60 44.0 4.11e-01 78.3% 65.5%
2ga1A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 42.0 3.70e-01 80.4% 56.3%
4qozB02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 50.0 3.19e-01 100.0% 84.2%
5im4F00 3.40.50.510 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component 0.56 47.0 3.41e-01 95.7% 90.1%
2hzdA00 6.10.20.40 Special › Helix non-globular › Arc Repressor Mutant, subunit A › TEA/ATTS domain 0.55 44.0 3.75e-01 93.5% 59.8%
2w96A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 47.0 3.50e-01 95.7% 44.2%
6oinA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 3.54e-01 80.4% 73.1%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.53 45.0 3.31e-01 100.0% 97.0%
5ywwA01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.51 36.0 2.84e-01 80.4% 63.5%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3684804 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.71 53.0 5.04e-01 82.6% 69.1%
4326930 141.1.1.4 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_synth_C 0.71 60.0 3.60e-01 97.8% 64.1%
3200045 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 52.0 4.78e-01 80.4% 66.7%
3284936 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 50.0 3.91e-01 78.3% 37.0%
3970054 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 46.0 4.51e-01 71.7% 66.0%
3855896 2004.1.1.122 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IIGP 0.67 56.0 3.32e-01 97.8% 36.8%
4287688 101.1.2.46 ↗ alpha arrays › HTH › HTH › winged helix domain › HrcA_DNA-bdg 0.66 47.0 3.81e-01 78.3% 50.5%
3602245 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.65 50.0 4.50e-01 82.6% 66.2%
4596757 101.1.2.89 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_DeoR 0.65 47.0 3.68e-01 78.3% 48.0%
4420420 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 46.0 3.72e-01 76.1% 52.2%
4490022 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.64 47.0 3.84e-01 78.3% 80.7%
3588546 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.64 43.0 3.74e-01 78.3% 41.3%
4468068 101.1.2.46 ↗ alpha arrays › HTH › HTH › winged helix domain › HrcA_DNA-bdg 0.64 46.0 3.62e-01 78.3% 48.0%
4254926 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 45.0 3.95e-01 78.3% 65.3%
4679870 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 45.0 3.63e-01 78.3% 50.5%
4411875 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 45.0 3.35e-01 80.4% 36.3%
4107841 101.1.2.46 ↗ alpha arrays › HTH › HTH › winged helix domain › HrcA_DNA-bdg 0.62 45.0 3.72e-01 78.3% 53.3%
5014461 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 41.0 4.17e-01 84.8% 68.9%
5010525 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 42.0 3.64e-01 76.1% 55.7%
3737784 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.60 52.0 3.71e-01 97.8% 35.0%
3233568 3998.1.1.1 ↗ alpha arrays › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Inhibitor_I29 0.58 46.0 3.91e-01 87.0% 53.3%
3507784 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.51 44.0 3.52e-01 97.8% 72.2%