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Rep_78_protein
Euk-Viradeno-associated_virus_2
Rep_78_protein__YP_680423__adeno-associated_virus_2__10804
Identity
- Accession:
- YP_680423 ↗
- Protein ID:
- Rep_78_protein
- Kingdom:
- euk
Quality
73.8
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Quintoviricetes›
Piccovirales›
Parvoviridae›
Dependoparvovirus›
adeno-associated_virus_2
TaxID: 10804
Cluster
View cluster (29 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-175
Domain cluster:
rep: NS1__YP_009507375__Chipmunk_parvovirus__56820__D1-203
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08724.17 best | Rep_N | 248.7 | 5.10e-74 | 100.0% | 90.9% |
D2
medium
residues 308-421_457-489
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01057.24 best | Parvo_NS1 | 212.2 | 9.90e-63 | 78.2% | 42.1% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u0jA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.94 | 93.0 | 8.00e-01 | 100.0% | 85.4% |
| 1tueD00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.81 | 70.0 | 6.25e-01 | 91.8% | 83.7% |
| 3ja8204 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 62.0 | 4.70e-01 | 100.0% | 89.8% |
| 1svmA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 63.0 | 6.20e-01 | 98.6% | 96.7% |
| 4r7zA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 60.0 | 4.67e-01 | 100.0% | 89.6% |
| 3m6aA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 51.0 | 5.15e-01 | 98.6% | 88.7% |
| 6z6fA01 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.61 | 45.0 | 3.36e-01 | 77.6% | 68.6% |
| 1g8pA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 54.0 | 4.88e-01 | 99.3% | 94.5% |
| 2v5wB00 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.59 | 44.0 | 3.28e-01 | 77.6% | 76.8% |
| 4akgA12 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 44.0 | 4.84e-01 | 91.8% | 100.0% |
| 2r44A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 50.0 | 4.80e-01 | 99.3% | 91.6% |
| 6gpkA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.54 | 39.0 | 4.40e-01 | 94.6% | 100.0% |
| 3e1sA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 47.0 | 4.12e-01 | 99.3% | 70.8% |
| 4xjxA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 46.0 | 4.23e-01 | 99.3% | 97.9% |
| 4lpsA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 41.0 | 3.63e-01 | 87.8% | 93.5% |
ECOD (70)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2704206 | 2004.1.1.57 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Parvo_NS1 | 0.92 | 89.0 | 6.95e-01 | 100.0% | 65.9% |
| 3479645 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.92 | 70.0 | 6.44e-01 | 77.6% | 76.1% |
| 2810781 | 8001.1.1.1 ↗ | alpha arrays › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › PPV_E1_C | 0.84 | 74.0 | 6.34e-01 | 92.5% | 76.5% |
| 9753 | 2004.1.1.48 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PPV_E1_C | 0.80 | 71.0 | 6.28e-01 | 92.5% | 82.6% |
| 3253892 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.78 | 68.0 | 6.14e-01 | 92.5% | 88.7% |
| 3945876 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.78 | 71.0 | 5.81e-01 | 99.3% | 72.5% |
| 4959586 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.77 | 71.0 | 5.69e-01 | 99.3% | 69.5% |
| 5003620 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.77 | 70.0 | 5.29e-01 | 98.6% | 55.5% |
| 5029777 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.76 | 68.0 | 5.65e-01 | 97.3% | 76.9% |
| 5081314 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.75 | 68.0 | 5.57e-01 | 97.3% | 73.5% |
| 5022020 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.74 | 67.0 | 5.47e-01 | 97.3% | 77.7% |
| 3594982 | 2004.1.1.46 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM | 0.73 | 59.0 | 4.83e-01 | 85.0% | 78.5% |
| 4931926 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.73 | 65.0 | 5.04e-01 | 96.6% | 63.8% |
| 4030223 | 2004.1.1.418 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase | 0.71 | 61.0 | 4.90e-01 | 89.8% | 84.8% |
| 3611910 | 2004.1.1.418 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase | 0.71 | 61.0 | 4.86e-01 | 89.8% | 76.4% |
| 3703312 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.71 | 66.0 | 4.76e-01 | 100.0% | 79.5% |
| 4078827 | 2004.1.1.418 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase | 0.71 | 60.0 | 4.71e-01 | 89.8% | 87.3% |
| 3197159 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.71 | 59.0 | 4.17e-01 | 87.8% | 49.1% |
| None | — | 0.70 | 65.0 | 4.67e-01 | 100.0% | 84.1% | |
| 3465917 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.70 | 65.0 | 4.49e-01 | 100.0% | 71.9% |
| 3481498 | 2004.1.1.418 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase | 0.70 | 60.0 | 4.75e-01 | 89.8% | 80.7% |
| 5012900 | 2004.1.1.46 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM | 0.70 | 58.0 | 4.87e-01 | 86.4% | 85.4% |
| 3677397 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.70 | 65.0 | 4.43e-01 | 100.0% | 68.6% |
| None | — | 0.70 | 65.0 | 4.87e-01 | 100.0% | 85.1% | |
| 3255516 | 2004.1.1.46 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM | 0.70 | 60.0 | 4.74e-01 | 89.8% | 84.2% |
| None | — | 0.70 | 65.0 | 4.54e-01 | 100.0% | 71.2% | |
| None | — | 0.70 | 64.0 | 4.79e-01 | 99.3% | 88.9% | |
| 3695173 | 2004.1.1.46 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM | 0.70 | 60.0 | 4.69e-01 | 90.5% | 73.0% |
| 4017535 | 2004.1.1.418 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase | 0.70 | 59.0 | 4.57e-01 | 89.8% | 86.3% |
| 5003899 | 2004.1.1.46 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM | 0.70 | 59.0 | 4.75e-01 | 89.8% | 84.6% |
| 3476274 | 2004.1.1.418 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase | 0.70 | 59.0 | 4.76e-01 | 89.8% | 85.5% |
| 5025359 | 2004.1.1.46 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM | 0.70 | 59.0 | 4.75e-01 | 89.8% | 85.8% |
| 3550992 | 2004.1.1.418 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase | 0.69 | 59.0 | 4.81e-01 | 89.8% | 83.4% |
| 3602833 | 2004.1.1.46 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM | 0.69 | 59.0 | 4.66e-01 | 89.8% | 79.3% |
| 5048100 | 2004.1.1.156 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 | 0.69 | 60.0 | 4.93e-01 | 91.8% | 93.3% |
| 4314819 | 2004.1.1.58 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase | 0.69 | 60.0 | 5.41e-01 | 91.8% | 92.8% |
| 4971994 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.69 | 59.0 | 4.96e-01 | 91.8% | 95.2% |
| None | — | 0.69 | 64.0 | 4.41e-01 | 100.0% | 70.1% | |
| 5016962 | 2004.1.1.46 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM | 0.69 | 59.0 | 4.90e-01 | 90.5% | 83.2% |
| 4351475 | 2004.1.1.624 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase, AAA_5 | 0.69 | 59.0 | 4.86e-01 | 91.8% | 90.2% |
| None | — | 0.69 | 63.0 | 4.63e-01 | 99.3% | 85.7% | |
| 3681670 | 2004.1.1.46 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM | 0.69 | 59.0 | 4.51e-01 | 89.8% | 81.9% |
| 5011495 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.69 | 61.0 | 5.42e-01 | 98.6% | 69.0% |
| 3495061 | 2004.1.1.418 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase | 0.68 | 58.0 | 4.69e-01 | 89.8% | 87.0% |
| 3604643 | 2004.1.1.46 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM | 0.68 | 58.0 | 4.76e-01 | 90.5% | 85.3% |
| 3382056 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.68 | 63.0 | 4.41e-01 | 99.3% | 68.4% |
| 3698933 | 2004.1.1.46 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM | 0.68 | 58.0 | 4.62e-01 | 89.8% | 79.3% |
| 4195107 | 2004.1.1.58 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase | 0.68 | 61.0 | 4.92e-01 | 96.6% | 90.2% |
| 4926850 | 2004.1.1.22 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat | 0.67 | 58.0 | 5.73e-01 | 99.3% | 86.5% |
| 5034518 | 2004.1.1.46 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM | 0.66 | 55.0 | 4.84e-01 | 89.1% | 86.0% |
| 4955069 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.66 | 56.0 | 5.42e-01 | 99.3% | 82.5% |
| 3963614 | 2004.1.1.58 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase | 0.66 | 58.0 | 4.67e-01 | 93.9% | 84.8% |
| 3811172 | 2004.1.1.418 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase | 0.65 | 57.0 | 4.50e-01 | 92.5% | 80.3% |
| 3973821 | 2004.1.1.245 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_PrkA | 0.65 | 60.0 | 4.59e-01 | 98.6% | 78.1% |
| 3377628 | 2004.1.1.46 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM | 0.64 | 59.0 | 5.38e-01 | 100.0% | 98.9% |
| 4009631 | 2004.1.1.264 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF3987 | 0.63 | 57.0 | 4.46e-01 | 99.3% | 94.7% |
| 3594046 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.63 | 58.0 | 4.73e-01 | 99.3% | 73.5% |
| 5047240 | 2006.1.5.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Hist_deacetyl | 0.61 | 46.0 | 3.45e-01 | 77.6% | 70.0% |
| 4318504 | 2004.1.1.156 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 | 0.61 | 56.0 | 5.33e-01 | 98.6% | 93.5% |
| 4542391 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.61 | 56.0 | 4.65e-01 | 99.3% | 71.2% |
| 3290153 | 2004.1.1.156 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 | 0.61 | 56.0 | 5.10e-01 | 99.3% | 80.5% |
| 5022725 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 54.0 | 4.31e-01 | 95.2% | 74.6% |
| 4971317 | 2004.1.1.196 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 | 0.60 | 55.0 | 4.81e-01 | 99.3% | 90.7% |
| 3595524 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 54.0 | 4.23e-01 | 99.3% | 94.0% |
| 3411152 | 2004.1.1.46 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM | 0.60 | 55.0 | 4.63e-01 | 99.3% | 70.0% |
| 3614893 | 2004.1.1.493 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, AAA_2, AAA_5 | 0.60 | 54.0 | 4.14e-01 | 99.3% | 90.6% |
| 3704999 | 2004.1.1.154 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2,AAA_5 | 0.60 | 54.0 | 4.07e-01 | 99.3% | 91.0% |
| 5063952 | 2004.1.1.156 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 | 0.59 | 55.0 | 4.48e-01 | 99.3% | 60.4% |
| 4027459 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 45.0 | 4.44e-01 | 89.1% | 77.4% |
| 3164442 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 49.0 | 4.30e-01 | 99.3% | 72.6% |