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Rep

Euk-Vir

Rodent_associated_circovirus_1

Rep__YP_010084723__Rodent_associated_circovirus_1__2560708

Identity

Accession:
YP_010084723 ↗
Protein ID:
Rep
Kingdom:
euk

Quality

81.7 mean pLDDT

Taxonomy

Shotokuvirae› Cressdnaviricota› Arfiviricetes› Cirlivirales› Circoviridae› Circovirus› Circovirus_rongeur

TaxID: 2560708

Cluster

View cluster (114 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-109
PDB
Domain cluster: rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02407.23 best Viral_Rep 84.6 6.40e-24 90.4% 96.3%
D2 high residues 118-157
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1o82A00 1.20.225.10 Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48 0.67 55.0 4.76e-01 100.0% 72.9%
3rmqA02 6.10.140.1650 Special › Helix non-globular › Helix Hairpins › 0.66 54.0 4.86e-01 92.5% 75.0%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.64 51.0 4.94e-01 100.0% 92.0%
2xgjB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 51.0 3.29e-01 100.0% 18.9%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 4.04e-01 100.0% 55.2%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 4.19e-01 100.0% 62.7%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.61 48.0 3.86e-01 92.5% 62.4%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 48.0 4.06e-01 100.0% 60.0%
2v9kA01 1.10.10.2050 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 49.0 4.59e-01 92.5% 88.0%
3ne5B04 6.10.140.730 Special › Helix non-globular › Helix Hairpins › 0.59 45.0 4.34e-01 100.0% 90.2%
1x0tA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.57 39.0 3.47e-01 75.0% 49.2%
1sv0D00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.55 43.0 3.65e-01 100.0% 49.4%
2lhjA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.54 44.0 3.68e-01 100.0% 95.0%
2rjzA01 1.10.287.540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.54 36.0 3.67e-01 70.0% 80.6%
3jamD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.51 42.0 2.99e-01 97.5% 31.6%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3618122 2004.1.1.55 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNA_helicase 0.79 65.0 4.19e-01 100.0% 21.5%
3932988 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 59.0 5.39e-01 100.0% 69.1%
4194508 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 62.0 5.63e-01 100.0% 72.7%
5064314 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 59.0 5.17e-01 92.5% 63.3%
3590732 101.1.1.364 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_49 0.72 57.0 5.56e-01 92.5% 80.0%
3280314 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.71 61.0 5.56e-01 100.0% 80.0%
4943227 101.1.1.63 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.71 56.0 5.49e-01 92.5% 80.0%
3945581 101.1.1.2 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.71 57.0 5.28e-01 97.5% 92.7%
4510105 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 57.0 5.74e-01 92.5% 95.0%
4156355 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.69 57.0 3.88e-01 100.0% 31.2%
4936146 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.68 57.0 5.26e-01 100.0% 98.2%
3857628 101.1.3.29 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › CENP-B_N 0.68 55.0 4.75e-01 92.5% 56.9%
4987653 101.1.2.139 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_23 0.68 54.0 5.28e-01 92.5% 84.4%
5028266 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 52.0 4.72e-01 92.5% 61.0%
3410877 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 57.0 4.81e-01 100.0% 58.6%
3391053 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 56.0 5.45e-01 100.0% 88.9%
3981529 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.65 53.0 4.95e-01 100.0% 85.5%
4153644 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.65 51.0 4.71e-01 100.0% 76.7%
4224167 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.65 52.0 4.77e-01 100.0% 71.7%
4000360 101.1.1.35 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq 0.65 53.0 4.90e-01 100.0% 83.6%
5010328 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 50.0 4.69e-01 100.0% 78.2%
5001590 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.59 46.0 4.38e-01 100.0% 87.3%
5074415 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.56 44.0 2.99e-01 100.0% 88.1%
3222274 198.1.1.3 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.55 41.0 3.38e-01 100.0% 58.0%
D3 high residues 170-288
PDB
Domain cluster: rep: replication-associated_protein__YP_009001745__Dragonfly_larvae_associated_circular_virus-5_Viruses.__X__D171-266
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00910.29 best RNA_helicase 45.9 9.70e-12 71.4% 98.1%