Rep

Euk-Vir

Rodent_associated_circovirus_2

Rep__YP_010084726__Rodent_associated_circovirus_2__2560709

Identity

87.8 mean pLDDT

Shotokuvirae› Cressdnaviricota› Arfiviricetes› Cirlivirales› Circoviridae› Circovirus› Circovirus_kiore

TaxID: 2560709

View cluster (114 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 170-295

PDB

Domain cluster: rep: replication-associated_protein__YP_009001745__Dragonfly_larvae_associated_circular_virus-5_Viruses.__X__D171-266

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00910.29 best	RNA_helicase	48.2	1.90e-12	67.5%	99.1%

D2 medium residues 11-109

PDB

Domain cluster: rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02407.23 best	Viral_Rep	77.0	1.50e-21	85.9%	96.3%

D3 medium residues 118-157

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2hqtK00	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.63	48.0	3.53e-01	87.5%	40.2%
2xuaA00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.55	41.0	2.65e-01	97.5%	15.8%
1gpjA03	1.10.1200.70	Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Glutamyl tRNA-reductase dimerization domain	0.55	36.0	2.91e-01	70.0%	30.6%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3392384	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.70	57.0	4.65e-01	92.5%	49.3%