Rep_protein

Euk-Vir

Tomato_yellow_leaf_curl_China_alphasatellite

Rep_protein__YP_009666132__Tomato_yellow_leaf_curl_China_alphasatellite__240557

Identity

79.7 mean pLDDT

Alphasatellitidae› Colecusatellite› Tomato_yellow_leaf_curl_China_alphasatellite

TaxID: 240557

View cluster (111 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-104

PDB

Domain cluster: rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02407.23 best	Viral_Rep	77.7	9.30e-22	88.0%	98.8%

D2 high residues 155-292

PDB

Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00910.29 best	RNA_helicase	54.9	1.50e-14	70.3%	99.1%

D3 medium residues 112-152

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ehfD01	1.20.5.1930	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.76	59.0	5.11e-01	85.4%	57.1%
1x0tA01	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.74	54.0	4.77e-01	82.9%	54.1%
2e62A01	6.10.140.420	Special › Helix non-globular › Helix Hairpins ›	0.72	52.0	4.87e-01	78.0%	63.5%
2qkdA02	2.60.120.1040	Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain	0.70	58.0	4.05e-01	95.1%	40.0%
5vjhB03	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.70	49.0	3.04e-01	73.2%	14.1%
2e9xA01	1.20.58.1030	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.65	53.0	3.89e-01	100.0%	35.9%
2p67A01	1.20.5.170	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.62	46.0	4.35e-01	85.4%	88.5%
2icwG02	1.10.10.530	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2	0.60	50.0	4.02e-01	100.0%	73.0%
2jx4A01	6.10.140.460	Special › Helix non-globular › Helix Hairpins ›	0.58	42.0	4.09e-01	85.4%	81.2%
3h7iA02	1.10.150.20	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain	0.54	40.0	3.39e-01	85.4%	46.8%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4503487	5076.1.1.1 ↗	alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr	0.71	53.0	3.14e-01	80.5%	14.1%
4463837	375.1.1.26 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2	0.70	51.0	3.88e-01	82.9%	31.4%
4028054	140.1.1.14 ↗	alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e	0.67	58.0	3.87e-01	97.6%	38.8%
5055352	2007.1.11.0 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › L-fucose isomerase, N-terminal and second domains	0.66	51.0	3.47e-01	90.2%	25.2%
3240858	5001.1.1.35 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srsx	0.63	52.0	3.16e-01	97.6%	40.7%
4020473	609.1.1.0 ↗	alpha bundles › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase	0.60	49.0	3.58e-01	97.6%	80.0%