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Ribonuclease_BN
Euk-VirPandoravirus_dulcis
Ribonuclease_BN__YP_008319601__Pandoravirus_dulcis__1349409
Identity
- Accession:
- YP_008319601 ↗
- Protein ID:
- Ribonuclease_BN
- Kingdom:
- euk
Quality
85.0
mean pLDDT
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 58-234
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23023.2 best | Anti-Pycsar_Apyc1 | 28.0 | 2.60e-06 | 57.1% | 28.2% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1y44A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.89 | 63.0 | 5.30e-01 | 88.1% | 47.0% |
| 2e7yB00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.86 | 54.0 | 4.58e-01 | 97.2% | 41.6% |
| 6j4nC01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.86 | 69.0 | 5.33e-01 | 88.7% | 42.5% |
| 1zkpC00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.83 | 57.0 | 5.02e-01 | 89.8% | 50.2% |
| 7t28A01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.80 | 60.0 | 5.38e-01 | 88.1% | 57.2% |
| 3zwfA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.80 | 63.0 | 5.41e-01 | 88.7% | 54.8% |
| 7fctA01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.80 | 55.0 | 4.95e-01 | 87.0% | 52.3% |
| 5wcmA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.69 | 47.0 | 4.08e-01 | 100.0% | 46.8% |
| 6dq2A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.69 | 47.0 | 4.09e-01 | 100.0% | 47.7% |
| 2p4zA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.68 | 50.0 | 4.27e-01 | 91.0% | 48.7% |
| 1e5dA02 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.68 | 49.0 | 4.32e-01 | 100.0% | 52.2% |
| 2z0mA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 37.0 | 3.62e-01 | 87.6% | 58.1% |
| 4w7sA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 44.0 | 3.78e-01 | 83.1% | 76.9% |
| 2q9uB01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 48.0 | 4.27e-01 | 96.0% | 85.0% |
| 4jbeA02 | 3.40.309.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 | 0.51 | 30.0 | 3.35e-01 | 72.9% | 72.1% |
| 4akgA15 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 30.0 | 3.40e-01 | 74.6% | 77.3% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.91 | 65.0 | 5.19e-01 | 88.7% | 41.2% | |
| 4382195 | 247.1.1.31 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_4, Anti-Pycsar_Apyc1 | 0.91 | 65.0 | 5.11e-01 | 88.7% | 39.7% |
| 4938531 | 247.1.1.30 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Anti-Pycsar_Apyc1 | 0.91 | 64.0 | 6.78e-01 | 89.3% | 79.2% |
| 4460652 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.90 | 62.0 | 4.98e-01 | 88.1% | 40.3% |
| 4941343 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.90 | 61.0 | 5.00e-01 | 89.3% | 41.6% |
| 5069926 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.90 | 64.0 | 5.16e-01 | 90.4% | 42.0% |
| 4350189 | 247.1.1.29 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2, Anti-Pycsar_Apyc1 | 0.90 | 63.0 | 4.99e-01 | 88.7% | 39.4% |
| 3979364 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.89 | 69.0 | 5.71e-01 | 88.7% | 49.6% |
| 4258093 | 247.1.1.33 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B, Lactamase_B_2, Anti-Pycsar_Apyc1 | 0.89 | 63.0 | 5.09e-01 | 88.7% | 41.6% |
| 4508616 | 247.1.1.29 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2, Anti-Pycsar_Apyc1 | 0.89 | 63.0 | 5.07e-01 | 88.7% | 41.2% |
| 4218750 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.89 | 63.0 | 5.08e-01 | 88.7% | 41.8% |
| 4964631 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.89 | 62.0 | 5.45e-01 | 88.7% | 50.8% |
| 4031718 | 247.1.1.31 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_4, Anti-Pycsar_Apyc1 | 0.89 | 64.0 | 5.13e-01 | 88.7% | 42.3% |
| 4253056 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.89 | 69.0 | 5.72e-01 | 89.8% | 50.0% |
| 4627871 | 247.1.1.35 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2, Lactamase_B_4, Anti-Pycsar_Apyc1 | 0.89 | 64.0 | 5.13e-01 | 88.7% | 42.3% |
| 4347192 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.89 | 69.0 | 5.71e-01 | 89.8% | 50.0% |
| None | — | 0.89 | 64.0 | 5.10e-01 | 88.7% | 41.6% | |
| 4647266 | 247.1.1.31 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_4, Anti-Pycsar_Apyc1 | 0.89 | 63.0 | 5.12e-01 | 88.7% | 42.3% |
| 4974729 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.88 | 63.0 | 5.48e-01 | 88.7% | 51.0% |
| 4998129 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.88 | 65.0 | 5.52e-01 | 91.5% | 50.2% |
| 4390537 | 247.1.1.29 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2, Anti-Pycsar_Apyc1 | 0.88 | 63.0 | 5.05e-01 | 90.4% | 41.1% |
| 4170217 | 247.1.1.33 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B, Lactamase_B_2, Anti-Pycsar_Apyc1 | 0.88 | 64.0 | 5.11e-01 | 88.7% | 41.7% |
| 3942408 | 247.1.1.30 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Anti-Pycsar_Apyc1 | 0.87 | 60.0 | 5.22e-01 | 86.4% | 49.2% |
| None | — | 0.87 | 63.0 | 5.09e-01 | 88.7% | 42.3% | |
| 3949878 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.87 | 57.0 | 5.27e-01 | 76.3% | 54.4% |
| 4056229 | 247.1.1.31 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_4, Anti-Pycsar_Apyc1 | 0.86 | 63.0 | 5.10e-01 | 88.7% | 43.0% |
| 4139456 | 247.1.1.41 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B, Lactamase_B_4, Anti-Pycsar_Apyc1 | 0.86 | 63.0 | 5.10e-01 | 88.7% | 43.0% |
| 4107278 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.85 | 60.0 | 5.14e-01 | 88.7% | 48.5% |
| 4254890 | 247.1.1.30 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Anti-Pycsar_Apyc1 | 0.85 | 63.0 | 5.00e-01 | 88.7% | 41.2% |
| 3587866 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.85 | 57.0 | 5.04e-01 | 88.7% | 49.4% |
| 4943958 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.84 | 62.0 | 5.53e-01 | 100.0% | 56.3% |
| 3419536 | 247.1.1.13 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_4 | 0.83 | 61.0 | 5.64e-01 | 88.7% | 61.4% |
| 5048021 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.83 | 62.0 | 5.54e-01 | 100.0% | 57.1% |
| 2727465 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.82 | 72.0 | 5.57e-01 | 100.0% | 46.8% |
| 2862889 | 247.1.1.30 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Anti-Pycsar_Apyc1 | 0.81 | 60.0 | 5.40e-01 | 88.7% | 57.1% |
| 2992268 | 247.1.1.30 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Anti-Pycsar_Apyc1 | 0.80 | 56.0 | 4.98e-01 | 88.1% | 52.3% |
| 3610501 | 247.1.1.5 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B,HAGH_C | 0.78 | 50.0 | 4.12e-01 | 100.0% | 38.6% |
| 4986849 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.77 | 54.0 | 4.76e-01 | 100.0% | 50.8% |
| 4429651 | 247.1.1.29 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2, Anti-Pycsar_Apyc1 | 0.75 | 56.0 | 4.71e-01 | 91.0% | 48.2% |
| 4191329 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.75 | 56.0 | 4.67e-01 | 91.0% | 47.4% |
| 4215200 | 247.1.1.24 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B+Lactamase_B_2 | 0.75 | 56.0 | 4.64e-01 | 91.0% | 47.4% |
| 2087168 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.73 | 63.0 | 4.88e-01 | 88.7% | 59.5% |
| 4020789 | 247.1.1.35 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2, Lactamase_B_4, Anti-Pycsar_Apyc1 | 0.70 | 67.0 | 4.24e-01 | 100.0% | 32.8% |
| 3169393 | 247.1.1.13 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_4 | 0.70 | 66.0 | 4.16e-01 | 100.0% | 41.3% |
| 3438266 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.69 | 63.0 | 5.34e-01 | 96.0% | 68.1% |
| 3482544 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.69 | 65.0 | 4.16e-01 | 100.0% | 34.6% |
| 3442876 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.68 | 63.0 | 5.19e-01 | 96.6% | 59.5% |
| 5053572 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.68 | 50.0 | 4.47e-01 | 100.0% | 56.2% |
| 3829345 | 247.1.1.35 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2, Lactamase_B_4, Anti-Pycsar_Apyc1 | 0.67 | 64.0 | 4.09e-01 | 100.0% | 34.2% |
| 3673402 | 247.1.1.31 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_4, Anti-Pycsar_Apyc1 | 0.67 | 64.0 | 4.08e-01 | 100.0% | 39.3% |
| 4976682 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.67 | 51.0 | 3.59e-01 | 90.4% | 28.2% |
| 3188984 | 247.1.1.27 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › DUF4336 | 0.67 | 49.0 | 4.20e-01 | 100.0% | 48.0% |
| 4936643 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.67 | 52.0 | 4.35e-01 | 89.3% | 49.8% |
| 4026342 | 247.1.1.31 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_4, Anti-Pycsar_Apyc1 | 0.66 | 63.0 | 4.14e-01 | 100.0% | 32.4% |
| 3727963 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.66 | 57.0 | 4.42e-01 | 90.4% | 50.4% |
| 3990440 | 247.1.1.30 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Anti-Pycsar_Apyc1 | 0.63 | 47.0 | 4.16e-01 | 76.3% | 75.5% |
| 3787856 | 247.1.1.16 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_6 | 0.62 | 48.0 | 3.80e-01 | 100.0% | 41.2% |
| 3196539 | 2002.1.1.67 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pro_dh | 0.58 | 48.0 | 3.59e-01 | 88.7% | 81.6% |
| 4966402 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.54 | 46.0 | 4.32e-01 | 88.1% | 85.2% |
D2
medium
residues 235-385
Domain cluster:
rep: CAKLQF020000010.1__CAH1085069.1__SAMEA5780031_02164__00109__D153-303