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Ribonuclease_BN

Euk-Vir

Pandoravirus_neocaledonia

Ribonuclease_BN__YP_009482545__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009482545 ↗
Protein ID:
Ribonuclease_BN
Kingdom:
euk

Quality

84.9 mean pLDDT

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 83-134
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7t28A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.82 70.0 4.50e-01 100.0% 21.2%
4lb0A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.60 51.0 3.66e-01 98.1% 76.2%
1mzgB00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.60 48.0 3.56e-01 90.4% 65.0%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.59 43.0 3.91e-01 80.8% 57.7%
1ceeB00 3.90.810.10 Alpha Beta › Alpha-Beta Complex › SerineThreonine-protein kinase PAK-alpha; Chain A › CRIB domain 0.56 38.0 3.68e-01 86.5% 62.7%
3vpyA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.55 45.0 3.31e-01 94.2% 62.8%
1cp9A01 1.10.439.10 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 0.54 36.0 2.71e-01 71.2% 63.7%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 45.0 2.84e-01 98.1% 32.3%
2c4kA01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 44.0 3.18e-01 98.1% 38.9%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 38.0 2.86e-01 90.4% 98.8%
4f3nA00 3.40.50.12710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 41.0 2.56e-01 100.0% 72.2%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3835500 192.15.1.163 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › PF27048 0.60 39.0 3.77e-01 86.5% 56.7%
3328211 263.1.1.6 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › PF27048 0.57 38.0 3.38e-01 86.5% 45.0%
4383517 327.11.1.7 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_NusA_2nd 0.56 45.0 4.20e-01 96.2% 95.7%
3524254 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.56 40.0 2.42e-01 80.8% 66.7%
3712083 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.54 40.0 2.48e-01 82.7% 63.4%
3716521 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 41.0 2.57e-01 90.4% 59.5%
3180987 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.54 39.0 2.36e-01 82.7% 68.9%
3882973 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.54 38.0 2.33e-01 80.8% 67.0%
3353411 244.3.1.2 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › SufE 0.54 43.0 3.26e-01 94.2% 66.2%
3592319 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 38.0 2.25e-01 82.7% 56.8%
3552874 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.53 43.0 2.59e-01 94.2% 44.2%
3368421 101.1.2.497 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25874 0.52 37.0 3.03e-01 82.7% 63.2%
3702572 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.52 38.0 2.40e-01 82.7% 63.4%
3717203 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 39.0 2.80e-01 90.4% 53.8%
169012 223.2.1.1 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.52 40.0 2.94e-01 92.3% 97.6%
4947615 3604.1.1.0 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain 0.51 41.0 3.88e-01 92.3% 100.0%
5012892 169.1.1.1 ↗ alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_C 0.51 40.0 2.49e-01 98.1% 79.5%
3684732 11.1.3.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like 0.50 40.0 3.14e-01 100.0% 62.1%
D2 medium residues 135-225
PDB
Domain cluster: rep: Ribonuclease_BN__YP_009483520__Pandoravirus_quercus__2107709__D142-229
D3 medium residues 226-388
PDB
Domain cluster: rep: CAKLQF020000010.1__CAH1085069.1__SAMEA5780031_02164__00109__D153-303