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Ribonuclease_BN
Euk-VirPandoravirus_quercus
Ribonuclease_BN__YP_009483520__Pandoravirus_quercus__2107709
Identity
- Accession:
- YP_009483520 ↗
- Protein ID:
- Ribonuclease_BN
- Kingdom:
- euk
Quality
84.1
mean pLDDT
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 63-141
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7t28A01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.85 | 59.0 | 4.12e-01 | 74.7% | 24.2% |
| 6j4nC01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.84 | 60.0 | 3.83e-01 | 75.9% | 17.3% |
| 6dq2A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.68 | 48.0 | 3.30e-01 | 96.2% | 22.5% |
| 3lodA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.62 | 46.0 | 3.76e-01 | 78.5% | 49.0% |
| 2oryA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.61 | 45.0 | 2.95e-01 | 78.5% | 36.4% |
| 2ft0A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.60 | 43.0 | 3.18e-01 | 75.9% | 28.8% |
| 1xt9A00 | 3.40.395.10 | Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A | 0.58 | 51.0 | 3.79e-01 | 100.0% | 49.0% |
| 1dgjA04 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.55 | 40.0 | 3.28e-01 | 79.7% | 85.4% |
| 2fl4A02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 43.0 | 3.99e-01 | 100.0% | 67.3% |
| 4egeA01 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.54 | 42.0 | 3.51e-01 | 84.8% | 49.3% |
| 4i99A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 41.0 | 2.80e-01 | 84.8% | 41.9% |
| 4alzA01 | 3.30.1340.30 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › | 0.53 | 38.0 | 4.11e-01 | 97.5% | 98.4% |
| 2l33A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 31.0 | 3.00e-01 | 75.9% | 52.7% |
| 3pp9B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 45.0 | 3.52e-01 | 100.0% | 44.3% |
| 2a9sB00 | 3.90.950.20 | Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like | 0.52 | 35.0 | 2.83e-01 | 70.9% | 53.3% |
| 1kcfB00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.52 | 42.0 | 3.19e-01 | 97.5% | 76.8% |
| 1w1wA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 39.0 | 2.76e-01 | 84.8% | 40.9% |
| 6upsA01 | 3.40.395.10 | Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A | 0.50 | 44.0 | 3.60e-01 | 100.0% | 60.0% |
| 4iofB01 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.50 | 39.0 | 3.17e-01 | 88.6% | 91.7% |
| 3e7wA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.50 | 43.0 | 2.81e-01 | 100.0% | 82.4% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3955348 | 247.1.1.24 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B+Lactamase_B_2 | 0.89 | 64.0 | 4.25e-01 | 78.5% | 21.9% |
| 4050883 | 247.1.1.30 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Anti-Pycsar_Apyc1 | 0.86 | 65.0 | 4.19e-01 | 82.3% | 20.0% |
| 2862889 | 247.1.1.30 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Anti-Pycsar_Apyc1 | 0.86 | 61.0 | 4.19e-01 | 75.9% | 24.4% |
| 4998129 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.86 | 64.0 | 4.33e-01 | 79.7% | 23.6% |
| 4429651 | 247.1.1.29 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2, Anti-Pycsar_Apyc1 | 0.85 | 64.0 | 4.26e-01 | 81.0% | 22.1% |
| 4215200 | 247.1.1.24 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B+Lactamase_B_2 | 0.85 | 64.0 | 4.23e-01 | 81.0% | 21.8% |
| 4191329 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.85 | 64.0 | 4.22e-01 | 81.0% | 21.8% |
| 4827041 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.84 | 61.0 | 5.24e-01 | 77.2% | 50.4% |
| 3990440 | 247.1.1.30 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Anti-Pycsar_Apyc1 | 0.83 | 63.0 | 4.36e-01 | 79.7% | 27.3% |
| 4864713 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.80 | 64.0 | 5.76e-01 | 89.9% | 63.8% |
| 2087169 | 247.1.1.13 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_4 | 0.76 | 52.0 | 3.81e-01 | 75.9% | 27.6% |
| 3784692 | 247.1.1.13 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_4 | 0.75 | 67.0 | 3.75e-01 | 96.2% | 19.2% |
| 3396016 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.72 | 59.0 | 4.13e-01 | 86.1% | 33.8% |
| 2727465 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.72 | 63.0 | 4.06e-01 | 97.5% | 21.8% |
| 2727472 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.72 | 63.0 | 4.01e-01 | 97.5% | 20.7% |
| 5018285 | 213.1.1.25 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 | 0.65 | 46.0 | 4.17e-01 | 75.9% | 73.6% |
| 5059357 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.63 | 49.0 | 3.52e-01 | 83.5% | 29.6% |
| 3787856 | 247.1.1.16 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_6 | 0.62 | 47.0 | 3.07e-01 | 81.0% | 19.7% |
| 3868894 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.57 | 39.0 | 2.52e-01 | 72.2% | 22.1% |
| 3304792 | 2484.1.1.110 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE | 0.56 | 39.0 | 3.29e-01 | 72.2% | 80.0% |
| 4950269 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.56 | 41.0 | 2.99e-01 | 78.5% | 37.8% |
| 3396324 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.55 | 31.0 | 3.39e-01 | 78.5% | 66.2% |
| 4933267 | 2484.3.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › Creatinase_N | 0.54 | 40.0 | 3.48e-01 | 86.1% | 50.4% |
| 3520014 | 2484.3.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain | 0.54 | 41.0 | 3.46e-01 | 84.8% | 60.7% |
| 4945016 | 2484.3.1.7 ↗ | mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › Peptidase_M24 | 0.53 | 38.0 | 3.28e-01 | 86.1% | 45.2% |
| 3784945 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.53 | 39.0 | 2.73e-01 | 78.5% | 27.2% |
| 3598248 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 39.0 | 3.43e-01 | 79.7% | 58.3% |
| 3741142 | 309.1.1.17 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16, Peptidase_M16_C, Peptidase_M16_M, PqqF-like_C_4 | 0.52 | 39.0 | 2.26e-01 | 84.8% | 32.9% |
| 3203510 | 231.1.4.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Apc (acetophenone carboxylase) beta subunit middle domain › Hydantoinase_B | 0.51 | 38.0 | 3.28e-01 | 83.5% | 67.9% |
D2
medium
residues 142-229
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1m1zA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.66 | 41.0 | 2.88e-01 | 97.7% | 19.9% |
| 3s5jA02 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 39.0 | 3.41e-01 | 98.9% | 40.1% |
| 1pzmA00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 40.0 | 3.30e-01 | 90.9% | 34.7% |
| 2wteA01 | 3.40.50.11700 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 40.0 | 3.55e-01 | 93.2% | 45.7% |
| 7xhlE01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 44.0 | 3.68e-01 | 100.0% | 47.6% |
| 2hoeA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 47.0 | 3.96e-01 | 95.5% | 93.1% |
| 3m6aA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 46.0 | 3.91e-01 | 95.5% | 81.3% |
| 2xgjB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 43.0 | 3.31e-01 | 93.2% | 87.9% |
| 3f3kA00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.50 | 41.0 | 2.98e-01 | 90.9% | 61.5% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3949878 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.71 | 65.0 | 4.82e-01 | 100.0% | 57.2% |
| 4490179 | 109.4.1.1289 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30856 | 0.66 | 51.0 | 3.34e-01 | 83.0% | 58.4% |
| 4999357 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 48.0 | 3.34e-01 | 92.0% | 86.7% |
| 5011432 | 7573.1.1.1 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran | 0.56 | 34.0 | 2.76e-01 | 98.9% | 29.7% |
| 3332190 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 47.0 | 3.97e-01 | 93.2% | 87.6% |
| 4057956 | 2004.1.1.35 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Bac_DnaA | 0.54 | 47.0 | 3.53e-01 | 100.0% | 70.9% |
| 3285514 | 7516.1.1.1 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase | 0.53 | 46.0 | 3.34e-01 | 98.9% | 36.2% |
| 3356738 | 2484.1.1.42 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_2 | 0.50 | 40.0 | 3.54e-01 | 90.9% | 57.1% |
D3
medium
residues 230-389
Domain cluster:
rep: CAKLQF020000010.1__CAH1085069.1__SAMEA5780031_02164__00109__D153-303