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Ribonucleoside-diphosphate_reductase

Euk-Vir

Pandoravirus_macleodensis

Ribonucleoside-diphosphate_reductase__YP_009481447__Pandoravirus_macleodensis__2107707

Identity

Accession:: YP_009481447 ↗
Protein ID:: Ribonucleoside-diphosphate_reductase
Kingdom:: euk

Quality

78.7 mean pLDDT

Cluster

View cluster (6 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 253-322_819-933

PDB

Domain cluster: rep: IMGVR_UViG_3300042092_000730-3300042092-Ga0453238_010587_859_2079__D220-402

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	222.3	1.60e-65	100.0%	36.1%

D2 high residues 579-665

PDB

Domain cluster: rep: Ribonucleoside-diphosphate_reductase__YP_009482455__Pandoravirus_neocaledonia__2107708__D570-648

D3 medium residues 43-225

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6fhpD00	1.10.390.10	Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2	0.71	26.0	4.49e-01	77.0%	100.0%
2pqrA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.50	24.0	3.34e-01	72.7%	89.2%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3277072	1074.1.1.1 ↗	alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN	0.98	70.0	7.69e-01	75.4%	85.8%
3519243	1074.1.1.0 ↗	alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases	0.97	92.0	8.85e-01	99.5%	88.5%
3607359	103.2.1.1 ↗	alpha arrays › RuvA-C › ATP cone › ATP cone › Ribonuc_red_lgN	0.95	91.0	8.70e-01	99.5%	87.8%
4980139	103.2.1.0 ↗	alpha arrays › RuvA-C › ATP cone › ATP cone	0.78	36.0	5.03e-01	83.1%	84.0%
3610347	103.2.1.0 ↗	alpha arrays › RuvA-C › ATP cone › ATP cone	0.68	32.0	4.69e-01	82.5%	97.6%

D4 medium residues 226-240_968-1094_1185-1205

PDB

Domain cluster: rep: ribonucleotide-reductase,_large_subunit__YP_009042040__Bovine_gammaherpesvirus_6__1504288__D417-458_492-545_597-622

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	117.4	1.00e-33	85.3%	21.6%

D5 medium residues 323-352_389-423_760-818

PDB

Domain cluster: rep: Ribonucleoside-diphosphate_reductase__YP_008319822__Pandoravirus_dulcis__1349409__D332-358_376-411_793-822

D6 medium residues 702-759

PDB

D7 medium residues 1095-1184

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1peqA02	3.20.70.20	Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain ›	0.59	43.0	2.63e-01	100.0%	14.2%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3990908	3343.1.1.0 ↗	alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4)	0.51	39.0	2.48e-01	84.4%	29.2%

D8 medium residues 1206-1274

PDB

Domain cluster: rep: IMGVR_UViG_3300006567_000026-3300006567-Ga0099958_11086953__D213-268

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	35.4	7.30e-09	100.0%	12.2%