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Ribonucleoside-diphosphate_reductase

Euk-Vir

Pandoravirus_quercus

Ribonucleoside-diphosphate_reductase__YP_009483719__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483719 ↗
Protein ID:
Ribonucleoside-diphosphate_reductase
Kingdom:
euk

Quality

75.7 mean pLDDT

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 601-738
PDB
Domain cluster: rep: ribonucleotide-diphosphate_reductase_large_chain__YP_009119180__Pandoravirus_inopinatum__1605721__D522-641
D2 medium residues 47-148_164-187
PDB
Domain cluster: rep: ribonucleoside-diphosphate_reductase_large_chain__YP_009506879__Tunisvirus_fontaine2__1421067__D1-75_89-134
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5jj6B01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 30.0 3.46e-01 76.2% 64.6%
2pqrA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 33.0 3.85e-01 80.2% 90.3%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3519243 1074.1.1.0 ↗ alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases 0.97 93.0 7.66e-01 98.4% 69.5%
3607359 103.2.1.1 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › Ribonuc_red_lgN 0.95 92.0 7.49e-01 98.4% 66.8%
4312875 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.89 56.0 6.48e-01 88.9% 85.3%
4941992 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.54 39.0 2.92e-01 74.6% 63.4%
3845048 170.1.1.25 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › PNMA 0.51 34.0 3.65e-01 81.7% 81.0%
D3 medium residues 149-163_188-255
PDB
Domain cluster: rep: ribonucleotide_reductase_large_subunit__YP_232955__Vaccinia_virus__10245__D133-214
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00317.27 best Ribonuc_red_lgN 67.0 1.70e-18 90.4% 84.4%
D4 medium residues 256-317_851-877
PDB
Domain cluster: rep: MW074125.1__QXO06237.1__X__00148__D220-303
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02867.21 best Ribonuc_red_lgC 91.2 8.70e-26 100.0% 19.7%
CATH (91)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wghA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 1.00 98.0 5.60e-01 100.0% 16.3%
1r1rA02 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.93 90.0 5.35e-01 100.0% 20.3%
1xjkA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.92 87.0 5.05e-01 98.9% 15.5%
1peqA02 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.91 85.0 5.11e-01 96.6% 20.1%
2pq6A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.73 46.0 3.43e-01 84.3% 25.7%
1kjnA00 3.40.50.10160 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MTH777-like 0.71 49.0 4.02e-01 80.9% 41.4%
3pnxA00 3.40.1260.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like 0.71 62.0 5.03e-01 94.4% 84.4%
4xglA01 3.40.50.11980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.69 45.0 3.77e-01 82.0% 41.0%
3milB00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.68 59.0 4.35e-01 96.6% 66.8%
2yjnA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.68 44.0 3.21e-01 84.3% 23.9%
8b3yA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.68 59.0 4.02e-01 95.5% 43.7%
2qs7A00 3.40.1260.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like 0.68 59.0 5.06e-01 94.4% 84.1%
3pvsB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 59.0 4.91e-01 94.4% 55.6%
6fcxA01 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.67 60.0 4.15e-01 96.6% 33.5%
4pmxA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.67 59.0 4.05e-01 97.8% 35.9%
6d2xA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.67 57.0 3.89e-01 94.4% 49.2%
5f7uA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.66 58.0 3.79e-01 96.6% 28.6%
6fnuA00 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.66 58.0 3.99e-01 96.6% 33.8%
3p94A00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.66 56.0 4.35e-01 95.5% 67.2%
2bgkA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.66 53.0 3.79e-01 87.6% 64.4%
1shuX00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.65 56.0 4.46e-01 95.5% 84.0%
2g8lA03 3.40.50.10880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Uncharacterised protein PF01937, DUF89, domain 3 0.65 47.0 3.95e-01 83.1% 45.0%
3ndzA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.65 57.0 3.82e-01 97.8% 38.8%
1ii7A01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.65 56.0 4.09e-01 96.6% 40.6%
3wqoA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.65 55.0 3.93e-01 95.5% 41.3%
2j6vA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.64 55.0 3.88e-01 95.5% 50.0%
3kzpA00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.64 54.0 4.07e-01 95.5% 55.4%
7c2xA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.64 49.0 3.39e-01 83.1% 26.1%
1vjzA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.63 55.0 3.75e-01 96.6% 40.6%
3sy8C02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.63 54.0 3.93e-01 94.4% 48.0%
5karA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.63 54.0 3.55e-01 96.6% 35.1%
5nusA00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.63 54.0 4.15e-01 95.5% 89.6%
2hk0A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.63 53.0 3.74e-01 94.4% 42.4%
5fc1A01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.63 54.0 3.53e-01 96.6% 35.1%
3i6dA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 36.0 3.01e-01 82.0% 31.2%
3a2kA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.63 47.0 4.08e-01 83.1% 51.9%
2afbB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.62 54.0 3.65e-01 95.5% 30.7%
2basB01 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.62 53.0 3.97e-01 95.5% 54.4%
4akgA15 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 52.0 4.65e-01 96.6% 65.6%
4uulA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 46.0 3.91e-01 83.1% 47.4%
8c0zE01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 44.0 3.84e-01 80.9% 50.4%
3qz6A00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.61 51.0 3.66e-01 100.0% 31.3%
3lhxA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.61 52.0 3.69e-01 96.6% 70.0%
3nzpB02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.61 52.0 3.70e-01 97.8% 31.4%
3edyA02 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.61 51.0 3.47e-01 95.5% 63.7%
3loqA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.61 45.0 4.01e-01 83.1% 54.3%
1ojxE00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.61 52.0 3.80e-01 95.5% 37.7%
3kbbA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.61 42.0 3.57e-01 80.9% 43.8%
3s3tA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 47.0 3.99e-01 83.1% 62.1%
2gduA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.60 52.0 3.48e-01 95.5% 54.4%
4q6jB00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.60 52.0 3.79e-01 96.6% 44.5%
3dzvA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.60 52.0 3.72e-01 96.6% 37.1%
3s83A00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.60 51.0 3.68e-01 94.4% 35.5%
2xkbL00 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.59 53.0 3.49e-01 100.0% 66.5%
4wnyA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.59 45.0 4.00e-01 82.0% 65.9%
3fg9C01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.59 44.0 3.86e-01 80.9% 62.9%
3cisH00 3.40.50.12370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 45.0 3.17e-01 82.0% 30.5%
3hgmA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.59 45.0 3.80e-01 82.0% 65.3%
1jmvA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 45.0 3.86e-01 82.0% 62.9%
3nv7A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 43.0 3.57e-01 79.8% 44.5%
3pnzA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.58 49.0 3.35e-01 95.5% 25.5%
1up7A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 50.0 4.34e-01 95.5% 97.1%
1gv4A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 42.0 3.52e-01 84.3% 42.2%
2jaxA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 44.0 3.84e-01 82.0% 61.8%
1wy5A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 42.0 3.24e-01 83.1% 32.3%
3hu5A00 3.40.50.850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like 0.57 49.0 3.85e-01 95.5% 91.6%
7va8A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.56 50.0 3.58e-01 98.9% 47.7%
1mrzA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 42.0 3.51e-01 79.8% 46.8%
1im5A00 3.40.50.850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like 0.56 47.0 3.80e-01 94.4% 96.1%
2z3vA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 43.0 3.73e-01 82.0% 62.0%
1qrsA05 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 41.0 3.70e-01 77.5% 59.3%
2jhpA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 48.0 3.44e-01 97.8% 56.7%
8bixC01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.56 48.0 3.56e-01 96.6% 52.3%
3tnjA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 43.0 3.88e-01 82.0% 60.3%
1j09A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 40.0 3.65e-01 76.4% 57.9%
2efjA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 46.0 3.58e-01 96.6% 72.0%
6hcdD00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 41.0 3.62e-01 80.9% 57.8%
2wk1A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 47.0 3.49e-01 97.8% 65.3%
2fi1A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.54 38.0 3.52e-01 83.1% 54.5%
1wkvA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 41.0 3.21e-01 83.1% 35.6%
2ielA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 41.0 3.62e-01 82.0% 100.0%
1h0hA03 3.40.228.10 Alpha Beta › 3-Layer(aba) Sandwich › Dimethylsulfoxide Reductase; domain 2 › Dimethylsulfoxide Reductase, domain 2 0.54 46.0 3.36e-01 98.9% 86.2%
3ixqA01 3.40.50.1360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 42.0 3.53e-01 83.1% 59.2%
3dv9A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.54 44.0 3.66e-01 93.3% 73.5%
4rckA00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.53 41.0 3.21e-01 83.1% 40.7%
4da2A02 3.40.1350.60 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.53 46.0 3.84e-01 94.4% 69.7%
3u1vA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 44.0 3.41e-01 94.4% 87.9%
4zg5A00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.53 45.0 3.38e-01 98.9% 96.0%
4gmkA01 3.40.50.1360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 40.0 3.44e-01 83.1% 59.6%
1r6xA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 38.0 2.94e-01 78.7% 68.5%
4x7rA03 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.50 43.0 3.60e-01 100.0% 95.9%
ECOD (97)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4298539 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.98 95.0 5.59e-01 100.0% 19.3%
996122 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.97 94.0 5.47e-01 100.0% 18.0%
3942765 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.95 92.0 5.43e-01 100.0% 19.4%
4145444 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.95 92.0 5.44e-01 100.0% 19.6%
3963206 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.95 92.0 5.40e-01 100.0% 19.1%
4963031 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.95 91.0 5.29e-01 100.0% 17.4%
3500621 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.94 91.0 5.41e-01 100.0% 19.8%
5063882 1074.1.1.6 ↗ alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgC 0.94 88.0 5.61e-01 97.8% 28.5%
4937370 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.94 88.0 5.13e-01 97.8% 28.3%
4190659 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.94 91.0 5.18e-01 100.0% 16.8%
2504767 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.94 89.0 5.32e-01 98.9% 20.1%
3590466 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.94 89.0 5.27e-01 98.9% 18.7%
5058546 2500.1.1.0 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.93 89.0 5.19e-01 100.0% 19.5%
3972491 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.93 89.0 5.21e-01 100.0% 18.1%
4067125 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.93 89.0 5.31e-01 100.0% 20.2%
4990406 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.93 87.0 5.12e-01 98.9% 19.2%
4993733 2500.1.1.0 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.92 88.0 5.22e-01 100.0% 18.7%
4985374 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.92 89.0 5.19e-01 100.0% 17.9%
4934525 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.92 88.0 5.21e-01 100.0% 18.9%
4564490 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.92 88.0 5.16e-01 100.0% 18.8%
4994375 2500.1.1.0 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.91 85.0 5.11e-01 97.8% 20.2%
5040104 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.91 87.0 5.20e-01 100.0% 20.4%
4092215 7512.1.1.10 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_28 0.76 49.0 3.81e-01 83.1% 32.4%
4094928 2007.1.4.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.73 44.0 3.97e-01 79.8% 45.0%
5056760 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.73 45.0 3.46e-01 79.8% 29.7%
5010459 7545.1.1.3 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DrsE_2 0.72 63.0 5.49e-01 94.4% 83.8%
4993932 7545.1.1.1 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE 0.72 58.0 5.62e-01 94.4% 77.0%
None — 0.71 62.0 5.08e-01 93.3% 85.8%
4046072 7512.1.1.77 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_N 0.71 50.0 3.59e-01 84.3% 27.2%
2601595 7545.1.1.3 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DrsE_2 0.71 62.0 5.03e-01 94.4% 84.4%
3428824 7512.1.1.1 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT 0.70 52.0 3.21e-01 83.1% 14.5%
5024506 7545.1.1.3 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DrsE_2 0.70 61.0 5.26e-01 94.4% 83.7%
4992249 7545.1.1.1 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE 0.69 60.0 5.29e-01 94.4% 82.9%
4981836 7545.1.1.1 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE 0.68 59.0 5.18e-01 94.4% 84.6%
5071350 7545.1.1.3 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DrsE_2 0.68 59.0 5.04e-01 94.4% 82.9%
4982634 7545.1.1.0 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like 0.68 59.0 5.09e-01 94.4% 84.4%
5008349 7545.1.1.3 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DrsE_2 0.68 59.0 5.22e-01 94.4% 86.4%
4991425 7545.1.1.3 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DrsE_2 0.67 59.0 4.89e-01 94.4% 86.0%
4982083 7545.1.1.3 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DrsE_2 0.67 57.0 4.94e-01 92.1% 83.0%
4944927 7545.1.1.3 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DrsE_2 0.67 58.0 4.85e-01 94.4% 86.7%
3956842 7512.1.1.20 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › EryCIII-like_C 0.67 43.0 3.33e-01 80.9% 30.5%
4988576 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.67 51.0 4.34e-01 83.1% 63.3%
4990263 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.66 50.0 4.30e-01 83.1% 52.2%
5051906 7545.1.1.3 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DrsE_2 0.66 56.0 4.87e-01 92.1% 83.7%
4997440 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.65 51.0 4.44e-01 83.1% 57.7%
4958528 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.64 55.0 3.86e-01 96.6% 60.7%
4999072 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.64 48.0 4.26e-01 83.1% 54.6%
5046789 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.64 51.0 4.12e-01 95.5% 43.9%
4664422 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.64 48.0 4.20e-01 82.0% 53.3%
4081900 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.63 47.0 3.90e-01 82.0% 43.8%
4980167 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.63 54.0 3.93e-01 96.6% 40.8%
4971715 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.63 47.0 4.14e-01 83.1% 53.8%
3947532 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.62 44.0 4.03e-01 82.0% 55.0%
3970680 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.62 46.0 4.11e-01 82.0% 56.0%
4009477 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.62 47.0 4.07e-01 82.0% 62.1%
3339119 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.61 49.0 3.22e-01 84.3% 22.1%
3259156 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.61 45.0 4.03e-01 83.1% 53.8%
384421 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.61 45.0 3.96e-01 83.1% 52.6%
4946694 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.61 52.0 4.08e-01 96.6% 87.5%
4985983 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.61 47.0 4.06e-01 83.1% 62.6%
3972896 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.61 47.0 3.84e-01 82.0% 64.4%
4010166 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.60 45.0 3.90e-01 82.0% 49.7%
3959101 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.60 45.0 3.92e-01 79.8% 60.0%
4124153 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.60 44.0 3.12e-01 83.1% 23.7%
4178958 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.60 44.0 3.34e-01 83.1% 30.9%
3954644 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.60 45.0 3.78e-01 80.9% 66.5%
4996199 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.60 47.0 3.92e-01 83.1% 66.0%
4955605 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.60 46.0 3.85e-01 83.1% 65.2%
3953883 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.60 44.0 3.89e-01 80.9% 52.6%
5071204 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.60 46.0 3.93e-01 83.1% 62.8%
3278371 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.59 45.0 3.79e-01 82.0% 61.3%
1390955 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.59 46.0 3.82e-01 83.1% 54.8%
4954578 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.59 46.0 3.95e-01 83.1% 56.4%
5039083 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.59 45.0 3.99e-01 82.0% 56.8%
3174284 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.59 45.0 3.09e-01 83.1% 22.8%
3962430 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.59 46.0 3.61e-01 83.1% 46.5%
4987229 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.59 45.0 3.82e-01 82.0% 64.7%
4964490 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.59 45.0 3.67e-01 80.9% 58.7%
4383441 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.59 44.0 3.13e-01 83.1% 24.3%
3957683 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.59 44.0 3.76e-01 80.9% 59.1%
5064586 2003.1.1.367 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DEAD 0.59 48.0 3.86e-01 97.8% 43.7%
4487962 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.59 45.0 3.84e-01 83.1% 64.9%
3433557 7516.1.1.114 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › PF28143 0.58 45.0 3.11e-01 83.1% 24.5%
4930591 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.58 44.0 3.87e-01 83.1% 54.1%
5048111 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.58 44.0 3.74e-01 82.0% 59.7%
4167294 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.57 49.0 3.66e-01 98.9% 86.8%
3954133 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.57 43.0 3.65e-01 79.8% 57.9%
4988577 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.57 44.0 3.93e-01 83.1% 58.4%
4099547 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.57 44.0 3.74e-01 83.1% 61.8%
3955971 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.56 42.0 3.76e-01 79.8% 56.2%
3313526 7512.1.1.77 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_N 0.56 49.0 3.53e-01 95.5% 87.2%
4475588 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.56 42.0 3.77e-01 82.0% 58.5%
4656730 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.55 48.0 3.53e-01 100.0% 58.5%
3511769 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.54 44.0 3.78e-01 91.0% 55.9%
4056922 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.53 40.0 3.62e-01 83.1% 57.6%
5022999 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.53 40.0 2.96e-01 83.1% 29.4%
4959195 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.52 39.0 3.51e-01 80.9% 63.8%
D5 medium residues 318-356_371-402_821-850
PDB
Domain cluster: rep: Ribonucleoside-diphosphate_reductase__YP_008319822__Pandoravirus_dulcis__1349409__D332-358_376-411_793-822
D6 medium residues 403-458_567-591_763-782
PDB
Domain cluster: rep: NC_049857.1__YP_009905618.1__H1Z36_gp148__00099__D564-618_811-862
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cw8A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.87 56.0 4.61e-01 100.0% 39.1%
4o1sA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.85 54.0 4.46e-01 100.0% 38.8%
4e2tB00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.85 57.0 4.69e-01 100.0% 41.4%
2jmzA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.83 52.0 4.30e-01 100.0% 38.1%
1dq3A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.81 55.0 4.42e-01 100.0% 39.5%
2imzA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.80 52.0 4.56e-01 100.0% 47.2%
5o9iA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.80 54.0 4.42e-01 100.0% 40.9%
1at0A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.77 51.0 4.44e-01 100.0% 46.9%
6zgqA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.71 47.0 4.17e-01 100.0% 46.9%
1b33N01 3.30.1490.170 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Allophycocyanin linker chain (domain) 0.56 31.0 4.05e-01 98.0% 100.0%
1dfaA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.56 50.0 3.99e-01 100.0% 65.8%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.53 32.0 3.27e-01 95.0% 60.2%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3602706 69.1.1.3 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT 0.94 60.0 5.24e-01 100.0% 47.1%
4993853 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.88 57.0 4.69e-01 100.0% 40.0%
5012957 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.88 57.0 4.64e-01 100.0% 38.3%
5030213 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.88 56.0 4.83e-01 100.0% 44.0%
3949431 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.86 58.0 5.00e-01 100.0% 46.7%
5028788 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.86 52.0 4.57e-01 100.0% 44.3%
2524072 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.85 56.0 4.60e-01 100.0% 40.0%
4983458 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 54.0 4.50e-01 100.0% 40.0%
164902 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.83 52.0 4.20e-01 100.0% 35.6%
4934481 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.83 63.0 5.40e-01 100.0% 53.4%
3257888 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.83 54.0 4.63e-01 100.0% 44.7%
4983616 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.82 56.0 4.55e-01 100.0% 41.2%
4933756 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.82 54.0 4.74e-01 100.0% 48.6%
4039971 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.81 57.0 4.59e-01 100.0% 41.7%
4941327 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.80 62.0 5.39e-01 100.0% 55.9%
4342207 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.78 55.0 4.77e-01 100.0% 49.3%
3518586 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.78 52.0 4.05e-01 100.0% 33.7%
4993437 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.77 57.0 5.01e-01 100.0% 54.2%
4993581 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.72 56.0 4.67e-01 100.0% 48.8%
5035476 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.71 56.0 4.72e-01 100.0% 52.5%
5066389 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.70 56.0 4.44e-01 100.0% 44.2%
4975503 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.70 55.0 4.46e-01 100.0% 46.1%
4996523 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.60 56.0 4.37e-01 100.0% 60.5%
5029854 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.59 55.0 4.23e-01 100.0% 47.6%
None — 0.53 47.0 3.67e-01 100.0% 83.1%
3598128 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 27.0 2.76e-01 100.0% 46.7%
4003172 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.50 32.0 2.59e-01 100.0% 32.8%
D7 medium residues 991-1112_1223-1243
PDB
Domain cluster: rep: GP45__YP_007417818__Caviid_betaherpesvirus_2__33706__D582-697
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02867.21 best Ribonuc_red_lgC 100.5 1.30e-28 86.0% 18.7%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wghA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.84 83.0 5.11e-01 100.0% 28.1%
1xjkA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.79 77.0 4.79e-01 100.0% 28.0%
1r1rA02 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.76 74.0 4.81e-01 100.0% 37.3%
1peqA02 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.76 73.0 4.84e-01 100.0% 43.3%
1l1lA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.68 64.0 4.25e-01 100.0% 31.7%
1b8bA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.66 62.0 4.09e-01 100.0% 33.6%
4cidA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 32.0 2.76e-01 87.4% 32.3%
1mkyA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 34.0 3.33e-01 92.3% 50.7%
5dn8A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 33.0 3.20e-01 88.1% 49.1%
4ex6A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 24.0 3.47e-01 79.7% 97.0%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5063882 1074.1.1.6 ↗ alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgC 0.97 56.0 3.98e-01 76.9% 23.7%
3823652 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.87 86.0 5.42e-01 100.0% 35.4%
996122 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.86 85.0 5.33e-01 100.0% 32.0%
4015532 2500.1.1.0 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.85 83.0 5.25e-01 100.0% 31.7%
4822330 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.83 80.0 5.37e-01 100.0% 46.3%
4298539 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.83 81.0 5.18e-01 100.0% 35.9%
4994375 2500.1.1.0 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.82 80.0 5.22e-01 100.0% 40.8%
4934525 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.82 80.0 5.09e-01 100.0% 33.2%
4990406 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.81 79.0 4.99e-01 100.0% 75.6%
4937370 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.81 79.0 4.95e-01 100.0% 34.5%
5040104 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.81 79.0 5.14e-01 100.0% 37.3%
3972491 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.81 79.0 5.00e-01 100.0% 74.6%
4190659 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.80 78.0 4.76e-01 100.0% 30.4%
4564490 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.80 78.0 4.94e-01 100.0% 33.9%
4993733 2500.1.1.0 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.79 77.0 4.93e-01 100.0% 60.4%
4985374 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.79 77.0 4.88e-01 100.0% 26.6%
3500621 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.79 77.0 4.98e-01 100.0% 37.7%
5030208 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.79 77.0 4.79e-01 100.0% 31.9%
4145444 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.77 75.0 4.84e-01 100.0% 36.0%
3963206 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.77 75.0 4.81e-01 100.0% 35.1%
3942765 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.77 74.0 4.81e-01 100.0% 35.7%
2472944 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.77 75.0 5.01e-01 100.0% 33.6%
2504767 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.76 74.0 4.82e-01 100.0% 40.4%
3590466 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.76 74.0 4.72e-01 100.0% 37.6%
4067125 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.76 74.0 4.79e-01 100.0% 34.5%
4963031 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.74 72.0 4.50e-01 100.0% 27.1%
3958480 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.71 60.0 4.27e-01 87.4% 34.6%
4208725 2500.1.1.0 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.69 63.0 4.16e-01 100.0% 27.0%
5051775 2500.1.1.9 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › RNR-II_ins_dom 0.69 63.0 4.20e-01 100.0% 27.8%
4825675 2500.1.1.0 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.67 59.0 4.79e-01 95.8% 52.8%
5074562 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.51 35.0 3.50e-01 91.6% 68.1%
5076437 2006.1.4.36 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_3 0.51 34.0 3.57e-01 92.3% 72.6%
5079189 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.51 36.0 3.61e-01 90.9% 72.0%
4177857 2005.1.1.13 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like 0.50 37.0 3.65e-01 93.0% 72.0%
D8 medium residues 1113-1222
PDB
Domain cluster: rep: Ribonucleoside-diphosphate_reductase__YP_009481447__Pandoravirus_macleodensis__2107707__D1095-1184
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02867.21 best Ribonuc_red_lgC 31.4 1.10e-07 100.0% 11.6%
D9 medium residues 1317-1398
PDB
Domain cluster: rep: Ribonucleotide_reductase_large_subunit_protein__YP_009143381__Raccoonpox_virus__10256__D684-741
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02867.21 best Ribonuc_red_lgC 61.8 7.00e-17 64.6% 10.1%