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Ribonucleotide_reductase,_small_subunit
Euk-VirSheeppox_virus
Ribonucleotide_reductase,_small_subunit__NP_659593__Sheeppox_virus__10266
Identity
- Accession:
- NP_659593 ↗
- Protein ID:
- Ribonucleotide_reductase,_small_subunit
- Kingdom:
- euk
Quality
86.4
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Capripoxvirus›
Sheeppox_virus
TaxID: 10266
Cluster
View cluster (111 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 39-142
Domain cluster:
rep: JM118__YP_238421__Macaca_fuscata_rhadinovirus__272551__D34-136
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00268.28 best | Ribonuc_red_sm | 142.3 | 3.00e-41 | 100.0% | 37.4% |
D2
medium
residues 143-168_187-213
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pihA00 | 1.20.1500.10 | Mainly Alpha › Up-down Bundle › YheA-like fold › YheA/YmcA-like | 0.86 | 69.0 | 5.06e-01 | 84.9% | 39.0% |
| 4fvmA06 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.84 | 68.0 | 7.21e-01 | 84.9% | 95.8% |
| 3ehfD01 | 1.20.5.1930 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.83 | 67.0 | 6.32e-01 | 86.8% | 82.5% |
| 4hb1A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.82 | 65.0 | 7.08e-01 | 83.0% | 100.0% |
| 2a26B01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.78 | 61.0 | 6.64e-01 | 84.9% | 100.0% |
| 2qtfA02 | 6.10.250.2860 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.77 | 64.0 | 6.74e-01 | 90.6% | 100.0% |
| 3ubkB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.75 | 59.0 | 4.39e-01 | 86.8% | 36.0% |
| 1e52A00 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.71 | 54.0 | 5.33e-01 | 83.0% | 85.7% |
| 2bvlA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 60.0 | 5.10e-01 | 100.0% | 72.1% |
| 5vbfA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.64 | 54.0 | 3.46e-01 | 100.0% | 38.9% |
| 4umwA04 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.62 | 43.0 | 3.39e-01 | 90.6% | 33.6% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4419515 | 150.1.1.59 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Coat_F | 0.90 | 75.0 | 6.39e-01 | 88.7% | 76.2% |
| 5050929 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.83 | 66.0 | 5.80e-01 | 84.9% | 60.0% |
| 4324075 | 192.11.1.1 ↗ | alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › UVR | 0.83 | 65.0 | 6.83e-01 | 83.0% | 97.9% |
| 4927364 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.79 | 73.0 | 6.50e-01 | 100.0% | 74.0% |
| 5068187 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.77 | 61.0 | 5.38e-01 | 84.9% | 62.2% |
| 3222259 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.76 | 68.0 | 4.06e-01 | 100.0% | 43.0% |
| 5060019 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.73 | 57.0 | 4.91e-01 | 84.9% | 62.4% |
| 5052262 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.71 | 56.0 | 5.04e-01 | 88.7% | 73.3% |
| 5012498 | 3843.1.1.28 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MbhD | 0.69 | 59.0 | 5.59e-01 | 98.1% | 81.5% |
| 2647738 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.69 | 54.0 | 3.77e-01 | 84.9% | 34.6% |
| 3200806 | 109.4.1.15 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VHS | 0.66 | 53.0 | 4.21e-01 | 98.1% | 42.6% |
| 3707677 | 4146.1.1.0 ↗ | alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like | 0.62 | 48.0 | 4.66e-01 | 90.6% | 75.0% |
D3
medium
residues 169-186_214-299
Domain cluster:
rep: ribonucleoside-diphosphate_reductase_small_chain__YP_009001342__Pithovirus_sibericum__1450746__D163-306
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00268.28 best | Ribonuc_red_sm | 66.3 | 4.30e-18 | 62.5% | 23.1% |