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RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00042
Bact-VirRifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00042
Identity
- Kingdom:
- phage
Quality
66.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 13-54
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4a0tA01 | 6.20.80.10 | Special › Other non-globular › Glycosyl hydrolase fold › | 0.65 | 56.0 | 4.97e-01 | 97.6% | 90.2% |
| 4nehA01 | 2.130.10.130 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal | 0.64 | 52.0 | 3.07e-01 | 100.0% | 39.0% |
| 1a0rB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.64 | 50.0 | 3.08e-01 | 100.0% | 31.9% |
| 4aezA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.63 | 50.0 | 3.08e-01 | 100.0% | 44.8% |
| 5c2vB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.61 | 48.0 | 2.91e-01 | 100.0% | 32.4% |
| 2ynoA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 46.0 | 2.91e-01 | 100.0% | 35.0% |
| 3tc9A02 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.60 | 47.0 | 2.93e-01 | 100.0% | 47.1% |
| 1r5mA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 47.0 | 2.86e-01 | 100.0% | 42.2% |
| 5ha4A02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.58 | 47.0 | 3.42e-01 | 97.6% | 69.1% |
| 3c7xA00 | 2.110.10.10 | Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain | 0.57 | 46.0 | 3.11e-01 | 100.0% | 59.2% |
| 1x31B02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.57 | 43.0 | 2.99e-01 | 85.7% | 82.5% |
| 1ym5A01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.55 | 46.0 | 3.30e-01 | 100.0% | 75.0% |
| 3nvqA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 43.0 | 2.53e-01 | 100.0% | 19.7% |
| 1mdaH00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 43.0 | 2.60e-01 | 100.0% | 25.8% |
| 1sg5A01 | 2.30.30.400 | Mainly Beta › Roll › SH3 type barrels. › Rof-like | 0.53 | 36.0 | 3.16e-01 | 76.2% | 67.5% |
| 4bndA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.53 | 43.0 | 3.01e-01 | 100.0% | 52.6% |
| 4paaA02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.53 | 40.0 | 2.77e-01 | 88.1% | 62.4% |
| 3td9A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 41.0 | 2.97e-01 | 100.0% | 74.8% |
| 4msxA02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 38.0 | 2.35e-01 | 88.1% | 81.5% |
| 4dunA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.51 | 41.0 | 3.07e-01 | 100.0% | 63.0% |
| 2y3vD00 | 2.170.210.20 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain | 0.51 | 41.0 | 2.90e-01 | 95.2% | 92.9% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4994189 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.69 | 53.0 | 3.39e-01 | 88.1% | 90.0% |
| 3482376 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.65 | 51.0 | 3.55e-01 | 100.0% | 61.7% |
| 3787794 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.64 | 51.0 | 3.01e-01 | 100.0% | 35.2% |
| 3933588 | 5.1.5.75 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 | 0.64 | 52.0 | 3.23e-01 | 100.0% | 36.9% |
| 4990144 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.64 | 51.0 | 3.17e-01 | 100.0% | 47.9% |
| 3585331 | 5.1.5.114 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_NWD2_C | 0.62 | 49.0 | 3.16e-01 | 100.0% | 59.2% |
| 3205626 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.62 | 49.0 | 3.26e-01 | 100.0% | 46.5% |
| 3502859 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.62 | 51.0 | 3.16e-01 | 100.0% | 30.6% |
| 5059920 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.61 | 46.0 | 3.84e-01 | 92.9% | 90.0% |
| 1289816 | 5.1.4.20 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Glu_cyclase_2 | 0.60 | 48.0 | 3.08e-01 | 100.0% | 42.1% |
| 3957008 | 5.1.3.7 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL | 0.60 | 46.0 | 3.30e-01 | 100.0% | 88.8% |
| 3799250 | 5.1.5.105 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_IFT140_1st | 0.59 | 47.0 | 2.84e-01 | 97.6% | 47.1% |
| 3503970 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.59 | 45.0 | 2.81e-01 | 100.0% | 27.5% |
| 3793856 | 5.1.4.421 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_1st, Beta-prop_IFT140_2nd | 0.59 | 47.0 | 2.61e-01 | 97.6% | 24.3% |
| 3930754 | 5.1.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin | 0.58 | 46.0 | 3.10e-01 | 100.0% | 57.5% |
| 3586726 | 5.1.4.421 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_1st, Beta-prop_IFT140_2nd | 0.58 | 43.0 | 2.70e-01 | 88.1% | 25.8% |
| 1290001 | 5.1.3.15 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Glu_cyclase_2 | 0.58 | 44.0 | 2.94e-01 | 100.0% | 48.3% |
| 3790336 | 5.1.3.164 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_Rol-3 | 0.57 | 47.0 | 3.02e-01 | 100.0% | 29.8% |
| 3218150 | 5.1.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed | 0.57 | 43.0 | 3.01e-01 | 100.0% | 59.5% |
| 2841490 | 5.1.5.229 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_WDR75_1st | 0.56 | 43.0 | 3.33e-01 | 100.0% | 67.4% |
| 3841403 | 5.1.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin | 0.56 | 45.0 | 2.99e-01 | 100.0% | 54.0% |
| 3856170 | 5.1.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin | 0.56 | 44.0 | 2.87e-01 | 100.0% | 58.4% |
| 3589515 | 80.1.1.1 ↗ | beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain › Fe-S_biosyn | 0.56 | 42.0 | 3.22e-01 | 88.1% | 99.1% |
| 4046575 | 286.1.1.2 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF | 0.55 | 46.0 | 3.47e-01 | 100.0% | 80.0% |
| 3967702 | 286.1.1.2 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF | 0.55 | 45.0 | 3.31e-01 | 97.6% | 78.4% |
| 3823026 | 304.8.1.89 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GUB_WAK_bind | 0.54 | 41.0 | 2.89e-01 | 97.6% | 97.8% |
| 3582142 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.53 | 38.0 | 2.65e-01 | 88.1% | 93.0% |
| 3989853 | 77.1.1.13 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › CFSR | 0.53 | 43.0 | 2.66e-01 | 100.0% | 32.7% |
| 4419934 | 4126.1.1.6 ↗ | a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › DabA | 0.52 | 42.0 | 2.73e-01 | 97.6% | 70.2% |
| 4020472 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.52 | 43.0 | 2.57e-01 | 100.0% | 32.6% |
| 4999472 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.51 | 39.0 | 2.60e-01 | 88.1% | 24.7% |
| 3893051 | 391.1.1.5 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa | 0.51 | 32.0 | 3.37e-01 | 81.0% | 74.3% |
D2
medium
residues 71-104