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RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00106

Bact-Vir

RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00106

Identity

Kingdom:
phage

Quality

90.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-177
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fprB00 3.30.70.2910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 42.0 4.60e-01 77.0% 78.1%
2y3uA02 3.30.980.50 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › 0.65 41.0 4.75e-01 81.4% 89.4%
4mt1A07 3.30.70.1440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.64 37.0 4.41e-01 100.0% 86.3%
2c5dC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 37.0 4.54e-01 86.3% 88.5%
1v8cA02 3.30.1370.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain 0.64 33.0 4.52e-01 74.5% 100.0%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 32.0 3.93e-01 88.2% 77.2%
2joeA01 3.30.1830.10 Alpha Beta › 2-Layer Sandwich › YehR-like fold › YehR-like 0.62 45.0 5.04e-01 87.0% 93.8%
4eeeA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 38.0 4.39e-01 90.7% 84.3%
4gafB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 37.0 4.39e-01 91.3% 88.2%
2gx8A02 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 34.0 4.11e-01 83.2% 86.9%
3pfoA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 44.0 4.81e-01 80.1% 94.5%
4h5bA00 3.30.1460.70 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.60 48.0 4.93e-01 96.9% 88.8%
1dfaA03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.59 30.0 3.77e-01 82.0% 80.0%
3tf8B00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.59 33.0 3.21e-01 71.4% 46.7%
4d6gA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.58 38.0 4.20e-01 100.0% 82.3%
1t3qC03 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.58 32.0 3.80e-01 96.9% 78.4%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.57 37.0 4.20e-01 85.7% 86.2%
3rt0C00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 44.0 4.30e-01 81.4% 89.0%
5mmjj00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.55 34.0 4.12e-01 97.5% 97.0%
2fn0B00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.54 48.0 3.60e-01 98.8% 75.2%
7qu9A01 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.53 48.0 3.53e-01 100.0% 78.3%
5cwaA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.53 48.0 3.42e-01 100.0% 74.1%
3os6C00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.53 47.0 3.64e-01 99.4% 91.7%
5jxzA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.53 47.0 3.66e-01 100.0% 93.6%
2g5fB00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.53 47.0 3.52e-01 99.4% 77.9%
4pswA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 29.0 3.20e-01 75.8% 65.4%
1qdlA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.52 47.0 3.49e-01 100.0% 81.0%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.51 33.0 3.76e-01 96.9% 88.1%
2oggA01 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.50 36.0 3.94e-01 73.9% 98.5%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5029744 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.68 41.0 4.80e-01 76.4% 84.3%
5058189 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.67 41.0 4.91e-01 74.5% 91.4%
4101838 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.66 41.0 4.87e-01 76.4% 90.9%
4045155 305.1.1.0 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.65 41.0 4.81e-01 84.5% 90.9%
3523036 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.64 39.0 4.58e-01 88.8% 86.4%
4619723 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.64 41.0 4.67e-01 86.3% 85.8%
3846399 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.63 38.0 4.33e-01 91.3% 80.0%
4058525 4142.1.1.1 a+b two layers › YehR-like › YehR-like › YehR-like › DUF1307 0.63 45.0 5.08e-01 87.0% 95.2%
3743702 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 26.0 3.19e-01 87.6% 57.1%
3705145 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.61 52.0 5.02e-01 89.4% 98.3%
3918163 304.20.1.1 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP_RNA-bind 0.61 43.0 4.57e-01 85.7% 82.1%
141279 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.61 45.0 4.90e-01 80.7% 93.1%
3401924 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 40.0 4.49e-01 91.3% 88.3%
3651251 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.60 54.0 4.96e-01 98.1% 98.1%
3789706 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.59 48.0 4.72e-01 85.1% 94.1%
3722681 331.3.1.30 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF3074 0.59 53.0 4.30e-01 98.1% 82.0%
3595511 304.20.1.0 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain 0.58 42.0 4.35e-01 82.6% 78.1%
5009443 244.3.1.3 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C 0.58 33.0 3.93e-01 99.4% 82.9%
3933746 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.58 39.0 4.40e-01 91.3% 89.2%
3797542 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 37.0 4.35e-01 90.7% 92.7%
3586038 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.58 37.0 3.90e-01 90.7% 70.3%
1407174 4142.1.1.2 a+b two layers › YehR-like › YehR-like › YehR-like › SP_0191-like 0.58 45.0 4.78e-01 81.4% 93.6%
3701983 304.153.1.0 a+b two layers › Alpha-beta plaits › Collagenase G catalytic helper subdomain › Collagenase G catalytic helper subdomain 0.58 50.0 4.86e-01 91.3% 98.9%
3508689 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.57 36.0 4.27e-01 90.7% 90.9%
3817727 295.1.1.44 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF29049 0.57 30.0 3.80e-01 88.2% 84.2%
3480482 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 38.0 4.29e-01 80.7% 92.5%
3979836 4142.1.1.1 a+b two layers › YehR-like › YehR-like › YehR-like › DUF1307 0.56 40.0 4.38e-01 87.0% 88.1%
3320980 309.1.1.4 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C 0.56 49.0 4.44e-01 95.7% 88.2%
4983770 244.3.1.3 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C 0.56 31.0 3.60e-01 100.0% 76.4%
3653619 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.55 41.0 3.80e-01 77.0% 93.5%
4029840 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.54 49.0 3.48e-01 100.0% 72.6%
3384464 304.127.1.0 a+b two layers › Alpha-beta plaits › Notch heterodimerization domain › Notch heterodimerization domain 0.54 41.0 4.44e-01 98.1% 96.9%
4033609 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.54 49.0 3.72e-01 99.4% 95.6%
81581 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.54 48.0 3.60e-01 98.8% 75.4%
4466356 314.1.1.12 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.54 47.0 3.93e-01 95.0% 82.9%
3497366 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.54 39.0 3.42e-01 73.9% 75.7%
4157871 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.54 48.0 3.43e-01 100.0% 68.2%
3589587 886.1.1.2 a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like 0.53 37.0 3.43e-01 85.7% 55.5%
3960505 880.1.1.0 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase 0.53 48.0 3.79e-01 100.0% 97.1%
4977133 880.1.1.0 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase 0.53 48.0 3.45e-01 100.0% 72.7%
3645055 880.1.1.4 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › PF30495 0.53 48.0 3.43e-01 100.0% 71.7%
4597625 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.53 48.0 3.49e-01 100.0% 78.4%
4927276 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.53 48.0 3.52e-01 100.0% 78.4%
3837999 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.53 47.0 3.70e-01 99.4% 89.4%
3740597 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.53 48.0 3.44e-01 100.0% 76.9%
3193766 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.53 48.0 3.35e-01 100.0% 72.3%
3311773 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.53 48.0 3.46e-01 100.0% 71.9%
4110714 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.53 48.0 3.48e-01 100.0% 77.7%
4221307 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.52 47.0 3.42e-01 100.0% 76.8%
4966490 880.1.1.0 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase 0.52 47.0 3.36e-01 100.0% 72.8%
3989379 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.52 47.0 3.43e-01 100.0% 77.4%
3987808 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.52 46.0 3.62e-01 100.0% 87.6%
5018408 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.52 47.0 3.30e-01 100.0% 69.9%
3714769 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.52 38.0 4.04e-01 82.6% 85.7%
3997162 273.1.1.1 a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.52 32.0 2.96e-01 75.2% 46.7%
3385559 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.52 46.0 3.63e-01 100.0% 86.7%
4463781 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.52 47.0 3.32e-01 100.0% 71.3%
5025349 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.52 46.0 3.67e-01 100.0% 87.0%
4547243 880.1.1.4 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › PF30495 0.52 46.0 3.52e-01 98.8% 89.6%
4032934 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.51 46.0 3.37e-01 100.0% 78.4%
3653398 331.9.1.10 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF28631 0.51 40.0 4.09e-01 82.0% 85.2%
3576789 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.51 35.0 3.42e-01 70.2% 82.2%
4070169 880.1.1.4 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › PF30495 0.51 46.0 3.50e-01 99.4% 81.0%
3905320 304.166.1.10 a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › PF29951 0.51 35.0 3.98e-01 88.2% 95.0%
5039601 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 4.04e-01 85.7% 81.8%
4117409 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.51 46.0 3.29e-01 100.0% 75.6%
4953791 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.50 45.0 3.25e-01 100.0% 72.8%
3842059 11.1.1.927 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29951 0.50 34.0 3.77e-01 78.3% 88.0%