Back to structures

RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00187

Bact-Vir

RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00187

Identity

Kingdom:
phage

Quality

86.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 102-148
PDB
Domain cluster: representative
CATH (65)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.85 70.0 4.95e-01 89.4% 39.7%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.83 61.0 5.84e-01 78.7% 70.4%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 67.0 5.39e-01 89.4% 60.7%
5y9sC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 68.0 5.60e-01 91.5% 65.9%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 67.0 5.38e-01 91.5% 61.1%
1ojlA03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.81 57.0 5.72e-01 74.5% 80.9%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 61.0 5.55e-01 80.9% 63.9%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 64.0 6.06e-01 87.2% 85.7%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 66.0 5.32e-01 91.5% 61.4%
6g1dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 66.0 5.44e-01 91.5% 67.1%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.79 65.0 4.17e-01 89.4% 23.3%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 61.0 5.49e-01 83.0% 74.6%
6uglB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 63.0 5.89e-01 87.2% 81.0%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 59.0 5.32e-01 80.9% 60.9%
2q0oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 59.0 5.30e-01 83.0% 71.6%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 59.0 4.89e-01 80.9% 48.8%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 61.0 5.43e-01 85.1% 71.6%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 64.0 5.50e-01 89.4% 69.4%
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.77 60.0 6.14e-01 85.1% 88.9%
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 60.0 5.80e-01 85.1% 85.2%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 63.0 5.86e-01 89.4% 82.8%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 59.0 5.32e-01 83.0% 63.5%
3c57B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 57.0 5.69e-01 80.9% 77.6%
1k78A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 61.0 5.45e-01 89.4% 68.2%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 61.0 5.19e-01 89.4% 62.7%
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.75 57.0 5.63e-01 85.1% 82.4%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 59.0 4.88e-01 89.4% 57.5%
5fo5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 61.0 4.99e-01 91.5% 62.5%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.74 57.0 5.75e-01 83.0% 81.2%
2avuB00 1.10.4000.10 Mainly Alpha › Orthogonal Bundle › Flagellar transcriptional activator fold › Flagellar transcriptional activator FlhD 0.74 52.0 4.01e-01 74.5% 33.7%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.74 60.0 4.38e-01 89.4% 65.9%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 61.0 5.12e-01 91.5% 63.7%
2jt1A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 59.0 5.22e-01 91.5% 93.0%
2hyjA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 51.0 5.21e-01 74.5% 95.7%
4u7bA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 53.0 5.72e-01 78.7% 100.0%
4o5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 59.0 5.29e-01 95.7% 84.5%
1r71A01 1.10.10.730 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain 0.72 56.0 5.33e-01 85.1% 78.6%
4ha8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 60.0 5.49e-01 93.6% 82.5%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 54.0 4.64e-01 83.0% 61.8%
1s3jA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 60.0 5.43e-01 93.6% 93.8%
5f7qC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 57.0 5.12e-01 93.6% 74.3%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 57.0 5.42e-01 89.4% 82.1%
1g2hA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 56.0 5.19e-01 89.4% 80.3%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 56.0 5.40e-01 89.4% 96.4%
2vxzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 57.0 5.17e-01 93.6% 86.4%
4wcgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 59.0 5.45e-01 97.9% 93.4%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.69 52.0 4.17e-01 83.0% 42.6%
1ulyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 55.0 4.58e-01 91.5% 55.1%
1b9mB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 54.0 4.38e-01 91.5% 51.5%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 56.0 5.05e-01 93.6% 77.6%
2z99A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 58.0 4.82e-01 97.9% 70.1%
3k9tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 57.0 5.11e-01 93.6% 72.7%
2y75A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 55.0 4.11e-01 93.6% 43.2%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 55.0 4.33e-01 93.6% 48.1%
2xrnB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 54.0 4.98e-01 93.6% 82.8%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 56.0 4.81e-01 95.7% 78.2%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 54.0 5.21e-01 89.4% 92.6%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 55.0 4.11e-01 93.6% 42.5%
6az6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 57.0 4.93e-01 97.9% 82.7%
3gw2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 53.0 4.34e-01 93.6% 61.3%
3mczA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 51.0 4.37e-01 89.4% 58.5%
1mgtA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 53.0 4.54e-01 93.6% 91.4%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 55.0 4.92e-01 97.9% 76.8%
5wxuD01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 47.0 2.95e-01 74.5% 17.5%
4pcqA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 51.0 5.07e-01 89.4% 96.0%
ECOD (85)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4159688 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.85 71.0 6.12e-01 89.4% 71.4%
3387117 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.85 74.0 6.04e-01 93.6% 70.0%
3590569 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.85 72.0 5.91e-01 91.5% 68.8%
5041148 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 70.0 5.95e-01 87.2% 61.4%
3945655 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.84 71.0 5.62e-01 91.5% 61.1%
4605333 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.83 70.0 5.67e-01 91.5% 64.7%
4370821 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.83 72.0 5.79e-01 93.6% 65.9%
3972217 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.83 71.0 5.58e-01 91.5% 61.1%
4215338 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.83 70.0 5.56e-01 91.5% 61.1%
5025805 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.83 66.0 6.22e-01 85.1% 74.5%
3971414 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.83 64.0 5.86e-01 83.0% 78.3%
3589664 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.83 72.0 5.77e-01 93.6% 67.1%
3977861 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.83 69.0 5.60e-01 91.5% 64.7%
3948722 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.83 69.0 5.42e-01 91.5% 57.9%
3972731 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.82 69.0 5.48e-01 91.5% 61.1%
3291721 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.82 69.0 5.31e-01 91.5% 54.0%
3942922 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.82 63.0 5.36e-01 83.0% 52.0%
4031672 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.82 69.0 5.69e-01 91.5% 68.8%
3942028 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.82 71.0 5.58e-01 93.6% 62.2%
3986748 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.82 68.0 5.44e-01 91.5% 62.2%
3966238 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.82 66.0 5.41e-01 89.4% 63.5%
4321251 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.82 63.0 5.23e-01 83.0% 59.5%
5015226 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.82 70.0 5.54e-01 93.6% 62.2%
3290297 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.82 69.0 5.68e-01 91.5% 70.0%
4030763 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.81 63.0 5.59e-01 83.0% 72.3%
3943494 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.81 68.0 5.50e-01 91.5% 64.7%
4976095 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.80 67.0 6.30e-01 89.4% 85.5%
3945377 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.80 62.0 5.52e-01 83.0% 72.3%
3958970 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.80 66.0 5.45e-01 89.4% 62.5%
3989440 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.80 67.0 5.35e-01 91.5% 61.1%
3944309 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.80 60.0 5.93e-01 80.9% 90.0%
3943176 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.80 66.0 5.30e-01 91.5% 61.1%
4492035 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.80 65.0 5.67e-01 89.4% 71.4%
4032354 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.80 68.0 5.40e-01 93.6% 62.2%
3959738 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 66.0 5.13e-01 89.4% 50.5%
4466704 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.79 66.0 5.10e-01 91.5% 49.0%
3286796 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.79 66.0 5.17e-01 91.5% 52.6%
142817 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.79 65.0 5.58e-01 89.4% 66.7%
3922450 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 61.0 6.55e-01 83.0% 100.0%
4606780 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.79 65.0 5.94e-01 89.4% 83.3%
3953111 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.79 63.0 5.52e-01 87.2% 71.4%
3971990 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.79 65.0 5.26e-01 89.4% 56.5%
3544647 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.79 64.0 5.75e-01 89.4% 67.7%
4510105 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 59.0 6.33e-01 80.9% 95.0%
3286659 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.79 63.0 5.46e-01 87.2% 75.7%
2475319 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.78 61.0 5.43e-01 85.1% 71.6%
4578719 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.78 64.0 5.80e-01 89.4% 76.2%
4985590 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.78 59.0 6.27e-01 80.9% 95.0%
5039663 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 65.0 5.45e-01 89.4% 58.7%
3974013 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.78 62.0 5.75e-01 87.2% 78.3%
4131887 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.78 64.0 5.33e-01 89.4% 63.3%
3968151 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.78 64.0 5.18e-01 89.4% 56.5%
3962552 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.78 63.0 5.38e-01 89.4% 64.0%
3942514 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.78 64.0 6.26e-01 89.4% 84.0%
5030781 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 60.0 6.33e-01 85.1% 100.0%
4486954 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.77 63.0 4.97e-01 89.4% 52.6%
5011649 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 63.0 6.42e-01 89.4% 93.3%
3589152 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 63.0 6.42e-01 91.5% 100.0%
4927434 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 62.0 6.35e-01 89.4% 97.8%
3966995 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.77 67.0 5.39e-01 97.9% 63.3%
4010691 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.77 62.0 5.92e-01 89.4% 89.1%
3980681 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.76 62.0 5.17e-01 89.4% 60.0%
4937081 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 58.0 5.21e-01 83.0% 67.7%
3290024 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.76 62.0 5.15e-01 89.4% 61.3%
3975610 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.76 61.0 5.39e-01 89.4% 68.6%
4241531 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.76 61.0 5.37e-01 89.4% 71.4%
5007153 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.76 61.0 4.56e-01 91.5% 48.3%
4395758 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.76 61.0 5.13e-01 89.4% 57.5%
3951084 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.76 63.0 5.50e-01 91.5% 70.0%
4031535 101.1.1.275 alpha arrays › HTH › HTH › Three-helical HTH › GerE 0.75 56.0 5.20e-01 80.9% 63.3%
4952294 101.1.2.870 alpha arrays › HTH › HTH › winged helix domain › GerE 0.75 66.0 6.30e-01 100.0% 90.9%
4031756 101.1.2.645 alpha arrays › HTH › HTH › winged helix domain › HTH_40 0.75 62.0 5.06e-01 91.5% 57.6%
2761 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.75 59.0 4.88e-01 89.4% 57.5%
4007717 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.75 62.0 5.15e-01 91.5% 63.7%
3972270 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.74 61.0 5.30e-01 89.4% 71.4%
4984738 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 55.0 5.61e-01 78.7% 91.1%
3942695 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.74 61.0 5.48e-01 91.5% 78.5%
4998605 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.74 60.0 4.53e-01 89.4% 88.2%
3289034 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.73 59.0 5.42e-01 91.5% 77.8%
3991300 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 59.0 4.98e-01 91.5% 65.0%
3976103 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.72 59.0 5.31e-01 91.5% 80.0%
3967284 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 56.0 5.27e-01 89.4% 73.3%
3411416 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 55.0 5.69e-01 89.4% 100.0%
5082910 140.1.1.38 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1f 0.71 58.0 4.15e-01 95.7% 32.7%
4980214 4156.1.1.0 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.71 57.0 4.23e-01 93.6% 74.6%
D2 high residues 156-251
PDB
D3 medium residues 3-99
PDB
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF00196.26 best GerE 23.8 3.90e-05 36.1% 54.4%
PF01022.27 HTH_5 22.4 1.20e-04 35.0% 59.6%
PF02796.22 HTH_7 25.4 1.80e-05 32.0% 60.0%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.82 39.0 5.67e-01 83.5% 100.0%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.78 39.0 5.17e-01 87.6% 87.5%
4a0zA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 42.0 5.24e-01 86.6% 89.8%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.69 40.0 3.90e-01 87.6% 52.3%
4kmfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 39.0 4.75e-01 88.7% 93.5%
1umqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 38.0 4.67e-01 93.8% 96.7%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 37.0 4.27e-01 95.9% 80.0%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 39.0 3.39e-01 93.8% 42.4%
4fe7A03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 51.0 4.92e-01 99.0% 90.8%
2gxgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 40.0 3.50e-01 91.8% 49.3%
2fa5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 37.0 3.28e-01 91.8% 44.6%
4b8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 38.0 3.44e-01 90.7% 47.1%
1hw1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 37.0 4.11e-01 87.6% 84.0%
3oioA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 49.0 4.76e-01 99.0% 88.4%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 38.0 3.52e-01 95.9% 53.5%
3mn2A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.55 47.0 4.60e-01 97.9% 93.5%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.55 41.0 3.78e-01 84.5% 61.1%
3mklA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 46.0 4.59e-01 97.9% 95.2%
4bxoA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.53 31.0 3.58e-01 83.5% 82.1%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.25e-01 91.8% 48.3%
2o7tA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 44.0 3.67e-01 100.0% 70.8%
2ao9I01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.51 38.0 3.99e-01 100.0% 88.5%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5077769 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.84 40.0 5.61e-01 84.5% 92.0%
4162857 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.84 42.0 5.91e-01 79.4% 98.0%
3603167 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.81 44.0 5.30e-01 80.4% 80.0%
4952035 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.81 46.0 5.78e-01 90.7% 91.7%
4990647 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 46.0 5.98e-01 80.4% 100.0%
4054648 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 44.0 5.82e-01 92.8% 98.2%
4133453 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 37.0 4.83e-01 81.4% 80.0%
5002577 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.78 41.0 3.84e-01 86.6% 42.5%
4008322 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.77 41.0 5.33e-01 87.6% 92.7%
5004841 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 46.0 5.56e-01 93.8% 90.8%
4965811 101.1.1.559 alpha arrays › HTH › HTH › Three-helical HTH › DUF7858 0.76 42.0 5.21e-01 86.6% 88.3%
3931341 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 44.0 4.62e-01 90.7% 63.3%
4944887 101.1.1.546 alpha arrays › HTH › HTH › Three-helical HTH › ThiN 0.70 40.0 3.72e-01 92.8% 45.0%
5045749 101.1.11.203 alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.70 39.0 4.71e-01 90.7% 83.1%
3243649 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.67 44.0 4.57e-01 86.6% 72.2%
4142269 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.62 36.0 4.49e-01 86.6% 100.0%
3979732 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 38.0 4.46e-01 91.8% 93.8%
5061884 101.1.2.887 alpha arrays › HTH › HTH › winged helix domain › DUF1670 0.58 50.0 4.27e-01 96.9% 84.4%
3976262 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.58 51.0 4.82e-01 99.0% 90.4%
4211867 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.57 49.0 4.78e-01 96.9% 90.9%
4998605 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.56 46.0 4.42e-01 85.6% 90.0%
5071227 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.56 49.0 3.43e-01 94.8% 72.0%
235968 138.1.1.9 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_delta_C 0.55 41.0 3.79e-01 84.5% 61.6%
3679768 101.1.2.454 alpha arrays › HTH › HTH › winged helix domain › FAM91_N 0.54 42.0 3.66e-01 83.5% 76.7%
3578615 101.1.1.302 alpha arrays › HTH › HTH › Three-helical HTH › FAM91_N 0.53 42.0 3.99e-01 83.5% 91.3%
3505200 4156.1.1.5 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › POLQ_helical 0.53 46.0 3.59e-01 99.0% 94.8%
4957698 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.51 43.0 3.97e-01 93.8% 79.8%