←Back to structures
RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00237
Bact-VirRifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00237
Identity
- Kingdom:
- phage
Quality
79.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-61
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5u1xA01 | 1.10.287.940 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel | 0.78 | 66.0 | 6.45e-01 | 97.6% | 89.1% |
| 7wboA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.76 | 67.0 | 4.37e-01 | 100.0% | 32.2% |
| 2bnlC00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.74 | 60.0 | 4.38e-01 | 100.0% | 40.3% |
| 3toyA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.74 | 61.0 | 4.45e-01 | 100.0% | 33.9% |
| 3u9jA00 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.73 | 61.0 | 4.11e-01 | 95.2% | 50.3% |
| 3cvrA01 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.72 | 56.0 | 3.49e-01 | 88.1% | 15.8% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.71 | 52.0 | 4.39e-01 | 95.2% | 46.5% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.70 | 62.0 | 5.14e-01 | 100.0% | 58.1% |
| 1s05A00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.70 | 58.0 | 4.19e-01 | 97.6% | 48.8% |
| 4h63K00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 62.0 | 4.70e-01 | 100.0% | 46.9% |
| 3behB01 | 1.20.120.540 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels | 0.70 | 58.0 | 4.25e-01 | 97.6% | 34.2% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 57.0 | 5.14e-01 | 90.5% | 69.0% |
| 2iw3A02 | 1.20.1390.20 | Mainly Alpha › Up-down Bundle › PWI domain › | 0.69 | 56.0 | 4.51e-01 | 95.2% | 47.8% |
| 1khvA04 | 6.10.140.320 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 53.0 | 5.05e-01 | 95.2% | 85.2% |
| 5ffdA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.67 | 58.0 | 4.07e-01 | 100.0% | 30.7% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.67 | 59.0 | 5.30e-01 | 100.0% | 74.1% |
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 59.0 | 4.45e-01 | 100.0% | 45.5% |
| 6hxlB01 | 1.10.230.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 | 0.62 | 49.0 | 3.65e-01 | 92.9% | 37.2% |
| 2hepA00 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.60 | 50.0 | 5.00e-01 | 100.0% | 95.2% |
| 1fcdC01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.55 | 42.0 | 3.52e-01 | 88.1% | 80.8% |
| 1n00A03 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.54 | 37.0 | 3.25e-01 | 76.2% | 53.4% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3601882 | 109.4.1.427 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SDA1_HEAT | 0.90 | 80.0 | 4.39e-01 | 100.0% | 7.7% |
| 3482343 | 109.4.1.427 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SDA1_HEAT | 0.85 | 72.0 | 3.99e-01 | 100.0% | 7.5% |
| 3229793 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.84 | 73.0 | 5.83e-01 | 100.0% | 49.4% |
| 3967398 | 3755.1.1.1 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › YscO | 0.83 | 71.0 | 4.87e-01 | 100.0% | 29.3% |
| 3428852 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.83 | 72.0 | 5.03e-01 | 100.0% | 31.9% |
| 3622615 | 604.1.1.172 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › 7TM_GPCR_Srx | 0.82 | 67.0 | 4.97e-01 | 100.0% | 36.2% |
| 4344201 | 864.1.1.0 ↗ | a+b two layers › DLC › DLC › DLC | 0.80 | 65.0 | 5.15e-01 | 92.9% | 43.3% |
| 2474881 | 397.7.1.0 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 | 0.79 | 66.0 | 6.48e-01 | 100.0% | 89.4% |
| 3968484 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.76 | 62.0 | 5.21e-01 | 90.5% | 55.7% |
| 3260418 | 5043.1.1.0 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like | 0.75 | 64.0 | 5.60e-01 | 100.0% | 84.6% |
| 3231463 | 632.8.1.2 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › Alpha-2-MRAP_C | 0.74 | 63.0 | 4.87e-01 | 97.6% | 43.2% |
| 4645372 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.74 | 65.0 | 4.95e-01 | 100.0% | 43.2% |
| 3993747 | 109.4.1.152 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RPN7 | 0.74 | 65.0 | 4.14e-01 | 100.0% | 21.6% |
| 3971539 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.71 | 64.0 | 5.22e-01 | 100.0% | 77.3% |
| 4031046 | 192.7.1.1 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB | 0.70 | 63.0 | 5.60e-01 | 100.0% | 88.3% |
| 3714352 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.69 | 61.0 | 4.36e-01 | 100.0% | 36.7% |
| 3678598 | 2003.1.5.30 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7 | 0.68 | 60.0 | 3.32e-01 | 100.0% | 9.5% |
| 3956103 | 5056.1.1.4 ↗ | extended segments › Gated mechanosensitive channel › Gated mechanosensitive channel › Gated mechanosensitive channel › RDD | 0.67 | 53.0 | 3.92e-01 | 100.0% | 31.9% |