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RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00254
Bact-VirRifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00254
Identity
- Kingdom:
- phage
Quality
81.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 49-167
Domain cluster:
rep: KX925554.1__APC46301.1__X__00039__D38-182
D2
high
residues 174-262
D3
high
residues 392-476
Domain cluster:
rep: Salt_Pond_R2_restored_H2O_MG_scaffold_2_prodigal-single.1__X__X__00297__D638-711
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18905.6 best | DUF5661 | 64.3 | 1.50e-17 | 83.5% | 92.3% |
D4
high
residues 490-618
Domain cluster:
rep: ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00333__D119-228
D5
medium
residues 278-372
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1q48A00 | 3.90.1010.10 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.65 | 45.0 | 4.01e-01 | 70.5% | 77.6% |
| 2wy3B00 | 2.60.40.1990 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 47.0 | 4.20e-01 | 83.2% | 97.8% |
| 3mn8B02 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.53 | 29.0 | 3.10e-01 | 71.6% | 60.2% |
| 2h41A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 34.0 | 3.49e-01 | 78.9% | 66.3% |
| 4g59C02 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.52 | 37.0 | 3.13e-01 | 74.7% | 73.4% |
| 2hvwA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.50 | 37.0 | 3.24e-01 | 77.9% | 76.2% |
| 2ch5A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 36.0 | 3.21e-01 | 75.8% | 87.3% |
| 3hbcA00 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.50 | 36.0 | 2.59e-01 | 75.8% | 59.9% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 137971 | 11.1.1.228 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › UL16 | 0.61 | 47.0 | 4.20e-01 | 83.2% | 97.8% |
| 4254413 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 37.0 | 3.80e-01 | 78.9% | 71.1% |
| 3471349 | 244.3.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU | 0.56 | 38.0 | 3.73e-01 | 70.5% | 100.0% |
| 2392667 | 9.11.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › Nm-ACP | 0.56 | 40.0 | 3.91e-01 | 74.7% | 100.0% |
| 3604850 | 868.1.1.9 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › RESC1_2 | 0.54 | 37.0 | 2.66e-01 | 70.5% | 41.6% |
| 3476559 | 5.1.13.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › Propeller domain of DCAF15 › DCAF15_WD40 | 0.54 | 42.0 | 2.91e-01 | 85.3% | 69.9% |
| 5033870 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.52 | 34.0 | 3.86e-01 | 78.9% | 85.3% |
| 3214898 | 5.1.11.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A | 0.52 | 40.0 | 2.69e-01 | 85.3% | 34.5% |
| 3182004 | 11.1.4.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Transthyretin | 0.52 | 36.0 | 3.13e-01 | 71.6% | 70.9% |
| 3995015 | 5.1.4.241 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › eIF2A | 0.51 | 45.0 | 3.32e-01 | 100.0% | 79.2% |
| 3436891 | 4.2.1.6 ↗ | beta barrels › SH3 › SAND › SAND › SAND_ULT1 | 0.51 | 35.0 | 3.48e-01 | 71.6% | 81.0% |
| 3875118 | 2484.1.1.120 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_4 | 0.50 | 36.0 | 2.54e-01 | 73.7% | 46.9% |