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RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00263
Bact-VirRifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00263
Identity
- Kingdom:
- phage
Quality
82.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-172
Domain cluster:
rep: SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00231__D2-145
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hdeC00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.58 | 46.0 | 4.48e-01 | 92.7% | 77.4% |
| 5dqqA01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.56 | 33.0 | 3.54e-01 | 93.3% | 66.4% |
| 6opmD01 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.52 | 40.0 | 3.45e-01 | 80.0% | 81.9% |
| 8hp8A01 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.52 | 40.0 | 4.01e-01 | 88.7% | 79.7% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3756888 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.59 | 41.0 | 4.09e-01 | 70.7% | 81.9% |
| 4171935 | 167.1.1.1 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 | 0.54 | 36.0 | 3.57e-01 | 74.0% | 63.1% |
| 4970028 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.53 | 47.0 | 3.87e-01 | 100.0% | 81.4% |
| 3193704 | 109.3.1.152 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › NACHT_N | 0.52 | 47.0 | 3.89e-01 | 100.0% | 67.4% |
D2
high
residues 184-277
Domain cluster:
rep: Salt_Pond_R2_C_D2_MG_scaffold_7_prodigal-single.1__X__X__00234__D180-301
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wmiA00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.67 | 36.0 | 3.75e-01 | 85.1% | 55.7% |
| 4i8oA02 | 3.30.160.690 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain | 0.64 | 37.0 | 3.81e-01 | 85.1% | 60.0% |
| 2cy9B00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.63 | 55.0 | 4.90e-01 | 95.7% | 84.1% |
| 4k02A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.62 | 53.0 | 4.84e-01 | 93.6% | 93.7% |
| 4ybvA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.62 | 53.0 | 4.88e-01 | 92.6% | 94.2% |
| 1sbkA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.62 | 53.0 | 4.64e-01 | 92.6% | 83.9% |
| 2qwzA01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.62 | 54.0 | 4.79e-01 | 95.7% | 88.7% |
| 3lkxB00 | 2.20.70.30 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain | 0.60 | 30.0 | 3.68e-01 | 71.3% | 77.8% |
| 1q4tA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.60 | 52.0 | 4.55e-01 | 95.7% | 83.8% |
| 3nwzB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.57 | 48.0 | 4.16e-01 | 93.6% | 75.5% |
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.57 | 38.0 | 3.91e-01 | 94.7% | 71.9% |
| 2hjjA00 | 3.30.160.130 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains | 0.56 | 29.0 | 3.35e-01 | 83.0% | 68.2% |
| 3m07A04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.56 | 32.0 | 3.62e-01 | 94.7% | 74.3% |
| 5mrwB01 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.56 | 38.0 | 3.49e-01 | 80.9% | 51.1% |
| 3ovcA01 | 3.30.200.150 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › | 0.55 | 37.0 | 4.24e-01 | 85.1% | 91.5% |
| 1fy7A02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 48.0 | 4.26e-01 | 97.9% | 73.1% |
| 1f1sA03 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.53 | 38.0 | 4.00e-01 | 94.7% | 86.6% |
| 2e8yA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 38.0 | 3.89e-01 | 98.9% | 77.8% |
| 3wdhA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 36.0 | 3.78e-01 | 98.9% | 78.6% |
| 1ul7A00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.53 | 37.0 | 3.61e-01 | 95.7% | 66.7% |
| 4llfD02 | 2.60.40.4030 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 37.0 | 3.40e-01 | 71.3% | 81.7% |
| 3tfzB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 45.0 | 3.71e-01 | 97.9% | 52.7% |
| 2aaaA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 35.0 | 3.43e-01 | 94.7% | 62.7% |
| 6vudA02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.52 | 36.0 | 3.97e-01 | 72.3% | 89.3% |
| 2wanA05 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 37.0 | 3.80e-01 | 98.9% | 79.5% |
| 2v8qB00 | 6.20.250.60 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.51 | 28.0 | 3.18e-01 | 85.1% | 68.5% |
| 1cbyA00 | 3.40.198.10 | Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like | 0.51 | 38.0 | 2.88e-01 | 86.2% | 33.0% |
| 3vz9B00 | 3.30.457.50 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 | 0.51 | 35.0 | 3.48e-01 | 97.9% | 67.0% |
| 1dd5A02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.50 | 35.0 | 3.82e-01 | 72.3% | 89.3% |
| 2wpgA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.50 | 31.0 | 3.33e-01 | 93.6% | 73.3% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3856809 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.61 | 40.0 | 4.09e-01 | 95.7% | 70.0% |
| 3890276 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.59 | 44.0 | 4.73e-01 | 92.6% | 91.3% |
| 4341156 | 4099.1.1.2 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 | 0.59 | 38.0 | 3.87e-01 | 93.6% | 67.8% |
| 3412971 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.57 | 42.0 | 4.05e-01 | 97.9% | 67.3% |
| 4453707 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.55 | 41.0 | 3.07e-01 | 96.8% | 32.7% |
| 3280991 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.55 | 30.0 | 3.54e-01 | 74.5% | 76.9% |
| 3578918 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.55 | 37.0 | 3.27e-01 | 87.2% | 47.4% |
| 3783938 | 4099.1.1.2 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 | 0.55 | 37.0 | 3.65e-01 | 93.6% | 62.5% |
| 3271857 | 101.1.15.1 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS | 0.55 | 48.0 | 3.58e-01 | 96.8% | 54.5% |
| 3505094 | 213.1.1.5 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › MOZ_SAS | 0.54 | 48.0 | 4.25e-01 | 98.9% | 99.3% |
| 5079094 | 873.1.1.13 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › ATC_hydrolase | 0.53 | 36.0 | 3.10e-01 | 71.3% | 96.8% |
| 5076792 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.52 | 36.0 | 3.05e-01 | 71.3% | 55.2% |
| 4049235 | 4099.1.1.2 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 | 0.52 | 37.0 | 3.76e-01 | 97.9% | 75.8% |
| 3789158 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.51 | 41.0 | 3.01e-01 | 88.3% | 95.0% |
| 5019856 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.51 | 41.0 | 4.35e-01 | 100.0% | 96.5% |
| 4269197 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.50 | 31.0 | 3.39e-01 | 77.7% | 73.8% |
| 3907123 | 5087.2.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 | 0.50 | 43.0 | 3.47e-01 | 95.7% | 75.7% |
D3
high
residues 394-519
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w53B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.65 | 48.0 | 4.35e-01 | 77.0% | 86.7% |
| 1juqC00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.62 | 55.0 | 5.22e-01 | 96.8% | 96.0% |
| 1y8aA02 | 1.10.3870.10 | Mainly Alpha › Orthogonal Bundle › AF1437-like domain fold › AF1437-like domain superfamily | 0.60 | 29.0 | 3.08e-01 | 93.7% | 49.1% |
| 3onkA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.59 | 50.0 | 4.94e-01 | 96.0% | 97.1% |
| 4ga0A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 40.0 | 3.84e-01 | 90.5% | 60.8% |
| 4u04B01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 37.0 | 4.29e-01 | 86.5% | 93.2% |
| 6igxD01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.57 | 51.0 | 4.05e-01 | 99.2% | 67.2% |
| 3fgaB00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.56 | 50.0 | 3.54e-01 | 100.0% | 54.6% |
| 5jj6B01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 37.0 | 4.08e-01 | 89.7% | 93.8% |
| 1rz4A01 | 1.25.40.250 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat; domain 1 | 0.52 | 43.0 | 4.44e-01 | 96.8% | 94.2% |
| 2z0qA01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.52 | 36.0 | 3.21e-01 | 71.4% | 67.9% |
| 4r8zA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.52 | 40.0 | 3.43e-01 | 83.3% | 68.8% |
| 1txdA01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.52 | 37.0 | 3.11e-01 | 74.6% | 64.9% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4526101 | 109.4.1.1570 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › U3snoRNP10, HEAT_HEATR1 | 0.63 | 53.0 | 3.09e-01 | 90.5% | 16.7% |
| 4508403 | 109.4.1.190 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6 | 0.52 | 43.0 | 3.86e-01 | 88.9% | 74.3% |
| 3797929 | 109.4.1.95 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 | 0.52 | 40.0 | 3.62e-01 | 87.3% | 58.3% |
| 3988700 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.51 | 35.0 | 3.09e-01 | 71.4% | 80.5% |