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RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00279

Bact-Vir

RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00279

Identity

Kingdom:
phage

Quality

91.3 mean pLDDT

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-75
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13223.12 best DUF4031 54.0 2.20e-14 94.6% 76.3%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cqhA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.62 45.0 4.22e-01 77.0% 77.4%
2v4jB01 3.30.70.3340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 44.0 3.70e-01 78.4% 64.4%
1d1rA00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.60 45.0 4.41e-01 82.4% 91.6%
2cteA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.60 41.0 4.06e-01 71.6% 79.7%
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 45.0 4.40e-01 82.4% 82.9%
1d7uA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.58 50.0 3.47e-01 97.3% 88.6%
2hfsA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.57 43.0 3.52e-01 82.4% 90.4%
3jb9a02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 41.0 4.37e-01 81.1% 98.4%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 38.0 3.65e-01 74.3% 76.5%
1xocA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.54 38.0 3.37e-01 77.0% 82.5%
1obbA00 3.90.1820.10 Alpha Beta › Alpha-Beta Complex › LDH C-terminal domain-like › AglA-like glucosidase 0.53 40.0 2.51e-01 83.8% 45.4%
5bseA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 36.0 2.90e-01 74.3% 90.2%
2rjbA00 3.10.180.80 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › Uncharacterised protein PF07063, DUF1338 0.50 39.0 2.54e-01 89.2% 47.4%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4596549 304.48.1.28 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Csm1_B 0.64 50.0 3.41e-01 85.1% 49.8%
5051925 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.63 50.0 4.41e-01 85.1% 68.2%
3197634 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.63 46.0 3.62e-01 78.4% 60.0%
4148999 4132.1.1.1 ↗ alpha bundles › IpaD-like › IpaD-like › IpaD-like › T3SS_TC 0.62 44.0 3.01e-01 75.7% 52.1%
4457666 304.22.1.1 ↗ a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.62 44.0 4.37e-01 77.0% 71.2%
5050934 304.8.1.21 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.61 42.0 4.42e-01 71.6% 96.9%
4944480 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.61 47.0 4.21e-01 85.1% 72.7%
4978934 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.61 46.0 4.28e-01 82.4% 77.9%
4390135 7577.1.1.13 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › SepSecS 0.60 49.0 3.18e-01 93.2% 70.8%
5583 306.3.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.60 45.0 4.41e-01 82.4% 91.6%
3214530 304.9.1.86 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF26088 0.60 45.0 4.16e-01 83.8% 77.0%
3267079 304.9.1.86 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF26088 0.58 43.0 4.00e-01 79.7% 78.9%
4865017 304.9.1.27 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › YlmH_RBD 0.58 45.0 4.31e-01 87.8% 87.8%
5010510 304.8.1.21 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.57 43.0 4.25e-01 82.4% 87.5%
4683278 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.57 42.0 4.08e-01 81.1% 89.4%
3482424 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.57 41.0 4.12e-01 78.4% 86.7%
5019786 304.24.1.5 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N 0.56 42.0 4.29e-01 82.4% 88.6%
4943447 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.54 40.0 4.07e-01 82.4% 85.3%
3322864 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.52 40.0 3.99e-01 87.8% 91.3%
4030271 601.7.1.16 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN_Swt1 0.51 38.0 3.19e-01 82.4% 79.3%