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RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00325

Bact-Vir

RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00325

Identity

Kingdom:
phage

Quality

80.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-105
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 41.0 3.88e-01 71.2% 50.0%
4emtA02 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.59 28.0 2.58e-01 71.2% 32.8%
5cflA02 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.56 27.0 2.41e-01 71.2% 29.9%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3471801 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.73 45.0 4.11e-01 72.1% 48.1%
3558744 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.71 42.0 3.92e-01 70.2% 48.8%
3998194 220.1.1.68 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_Tiam1 0.70 45.0 4.10e-01 76.0% 50.0%
4961801 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.69 37.0 2.90e-01 80.8% 26.3%
4533094 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.69 45.0 4.14e-01 76.0% 52.3%
4991162 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.67 37.0 2.88e-01 85.6% 26.0%
3263932 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.67 44.0 4.05e-01 76.9% 50.7%
5026722 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.67 59.0 5.29e-01 92.3% 77.8%
3937948 220.1.1.47 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.66 38.0 3.31e-01 70.2% 37.4%
5064976 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 37.0 3.22e-01 78.8% 36.9%
3942738 295.1.1.29 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › YjeJ 0.64 38.0 3.32e-01 71.2% 39.4%
3865654 220.1.1.52 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.61 42.0 4.02e-01 74.0% 60.8%
5021368 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.61 38.0 2.70e-01 78.8% 20.3%
5076085 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.61 35.0 2.75e-01 78.8% 27.6%
3859768 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 40.0 3.40e-01 72.1% 45.1%
3792405 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.57 43.0 2.75e-01 90.4% 16.4%
4937908 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.56 40.0 3.53e-01 76.9% 50.3%
3796100 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 48.0 4.20e-01 95.2% 86.7%
4025113 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 38.0 3.60e-01 76.9% 95.2%
3849805 3398.1.1.1 ↗ a/b three-layered sandwiches › STING C-terminal domain › STING C-terminal domain › STING C-terminal domain › TMEM173 0.51 29.0 2.34e-01 83.7% 25.2%
4964912 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.51 35.0 3.09e-01 72.1% 100.0%