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RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00352
Bact-VirRifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00352
Identity
- Kingdom:
- phage
Quality
71.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-64
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1svdM00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.73 | 62.0 | 5.13e-01 | 100.0% | 61.1% |
| 5eliA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 59.0 | 4.78e-01 | 100.0% | 68.8% |
| 6lxgA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.66 | 46.0 | 4.30e-01 | 75.4% | 100.0% |
| 4bpuC00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.66 | 50.0 | 3.10e-01 | 86.0% | 89.9% |
| 3l2pA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.64 | 50.0 | 4.77e-01 | 100.0% | 71.8% |
| 1j5yA02 | 3.30.1340.20 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain | 0.62 | 48.0 | 4.00e-01 | 89.5% | 46.7% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.62 | 47.0 | 4.55e-01 | 87.7% | 74.2% |
| 2mraA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.62 | 53.0 | 4.25e-01 | 100.0% | 86.3% |
| 1es6A02 | 2.60.510.10 | Mainly Beta › Sandwich › EV matrix protein fold › EV matrix protein | 0.61 | 47.0 | 4.07e-01 | 89.5% | 98.0% |
| 2jheA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.60 | 46.0 | 4.18e-01 | 86.0% | 95.1% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.60 | 50.0 | 4.41e-01 | 100.0% | 96.7% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.60 | 49.0 | 3.69e-01 | 100.0% | 94.0% |
| 3vpbB03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.59 | 52.0 | 4.19e-01 | 100.0% | 68.8% |
| 4iwxA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.59 | 52.0 | 4.18e-01 | 100.0% | 68.5% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.57 | 47.0 | 4.13e-01 | 100.0% | 71.3% |
| 3ty4B00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.56 | 46.0 | 2.93e-01 | 100.0% | 51.5% |
| 2p4zA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.55 | 46.0 | 2.97e-01 | 93.0% | 24.4% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.55 | 40.0 | 3.76e-01 | 82.5% | 69.7% |
| 4wiwA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.55 | 41.0 | 3.90e-01 | 82.5% | 100.0% |
| 4cvuA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 44.0 | 3.14e-01 | 100.0% | 60.3% |
| 3bk2A03 | 3.10.20.580 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 39.0 | 3.39e-01 | 82.5% | 75.8% |
| 1vq8B03 | 3.30.1430.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › | 0.53 | 45.0 | 3.72e-01 | 100.0% | 77.5% |
| 1uc8A03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.53 | 47.0 | 4.00e-01 | 100.0% | 63.8% |
| 5h4eA01 | 2.60.110.10 | Mainly Beta › Sandwich › Thaumatin › Thaumatin | 0.52 | 44.0 | 3.02e-01 | 100.0% | 49.4% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.52 | 39.0 | 3.65e-01 | 80.7% | 76.1% |
| 3snoA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.52 | 37.0 | 3.06e-01 | 80.7% | 68.6% |
| 2je8A01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 42.0 | 3.04e-01 | 100.0% | 87.5% |
| 5ttjA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 37.0 | 2.70e-01 | 89.5% | 94.6% |
| 2c60A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 41.0 | 3.82e-01 | 100.0% | 97.5% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4147528 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.79 | 58.0 | 5.46e-01 | 78.9% | 98.6% |
| 4952123 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.78 | 70.0 | 6.95e-01 | 100.0% | 95.0% |
| 4231372 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.72 | 54.0 | 5.12e-01 | 82.5% | 98.6% |
| 4964337 | 3115.5.1.1 ↗ | a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB | 0.67 | 53.0 | 5.36e-01 | 87.7% | 92.7% |
| 3285401 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.67 | 60.0 | 5.47e-01 | 100.0% | 84.0% |
| 4962335 | 3115.5.1.1 ↗ | a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB | 0.67 | 51.0 | 4.97e-01 | 86.0% | 80.0% |
| 3591023 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.65 | 52.0 | 4.70e-01 | 89.5% | 97.5% |
| 4978273 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.63 | 48.0 | 3.18e-01 | 86.0% | 85.3% |
| 3672250 | 207.1.1.116 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 | 0.62 | 44.0 | 3.14e-01 | 87.7% | 23.2% |
| 1954211 | 3346.1.1.1 ↗ | a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › UfSP2_N | 0.62 | 43.0 | 3.06e-01 | 77.2% | 82.6% |
| 3704468 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.60 | 51.0 | 4.21e-01 | 98.2% | 92.7% |
| 119284 | 3115.2.1.1 ↗ | a+b two layers › GP2-like › GP2 › GP2 › RNA_pol_inhib | 0.59 | 43.0 | 4.29e-01 | 84.2% | 79.7% |
| 4946939 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.59 | 48.0 | 3.45e-01 | 100.0% | 84.5% |
| 3787619 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.59 | 52.0 | 4.14e-01 | 100.0% | 67.8% |
| 5048876 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.58 | 48.0 | 4.70e-01 | 100.0% | 90.8% |
| 3958897 | 4187.2.1.0 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 | 0.58 | 45.0 | 3.65e-01 | 89.5% | 71.7% |
| 4024839 | 3307.1.1.0 ↗ | a+b two layers › Domain in small RNA methyltransferase HEN1 › Domain in small RNA methyltransferase HEN1 › Domain in small RNA methyltransferase HEN1 | 0.57 | 45.0 | 3.61e-01 | 89.5% | 87.5% |
| 5022263 | 322.1.1.2 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › 3H | 0.57 | 46.0 | 3.77e-01 | 91.2% | 99.1% |
| 3382922 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.57 | 43.0 | 2.68e-01 | 89.5% | 92.7% |
| 5036063 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.57 | 45.0 | 3.22e-01 | 89.5% | 67.8% |
| 3387077 | 327.13.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › YscJ_FliF_C | 0.56 | 40.0 | 3.15e-01 | 77.2% | 74.8% |
| 4078982 | 3019.1.1.1 ↗ | beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN | 0.56 | 46.0 | 3.70e-01 | 100.0% | 79.2% |
| 3371234 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.55 | 43.0 | 3.26e-01 | 91.2% | 82.5% |
| 2029587 | 1146.1.1.1 ↗ | few secondary structure elements › CRISPR-associated endonuclease C2c1 C-terminal domain › CRISPR-associated endonuclease C2c1 C-terminal domain › CRISPR-associated endonuclease C2c1 C-terminal domain › C2c1_Nuc-II | 0.54 | 47.0 | 3.79e-01 | 98.2% | 77.9% |
| 4927303 | 525.1.1.1 ↗ | a+b two layers › Urease, gamma-subunit › Urease, gamma-subunit › Urease, gamma-subunit › Urease_gamma | 0.54 | 42.0 | 3.47e-01 | 91.2% | 65.8% |
| 5078886 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.53 | 43.0 | 3.60e-01 | 100.0% | 50.0% |
| 4969863 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.53 | 38.0 | 3.61e-01 | 82.5% | 72.0% |
| 5028326 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.53 | 43.0 | 3.14e-01 | 100.0% | 40.0% |
| 3959955 | 304.163.1.3 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 | 0.52 | 37.0 | 3.89e-01 | 82.5% | 100.0% |
| 2561200 | 223.9.1.1 ↗ | a+b three layers › Profilin-like › Pa0076-like › Pa0076-like › TagF_N | 0.51 | 41.0 | 2.86e-01 | 100.0% | 52.6% |
| 4796557 | 4012.3.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 | 0.50 | 40.0 | 3.89e-01 | 91.2% | 90.5% |