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RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00370

Bact-Vir

RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00370

Identity

Kingdom:
phage

Quality

53.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-124
PDB
D2 high residues 128-178
PDB
Domain cluster: representative
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.84 63.0 5.59e-01 100.0% 57.7%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.81 66.0 5.77e-01 100.0% 59.7%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 58.0 5.83e-01 100.0% 80.4%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 61.0 6.12e-01 100.0% 86.3%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.76 57.0 5.71e-01 100.0% 78.8%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 60.0 6.22e-01 100.0% 95.7%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 60.0 6.02e-01 100.0% 86.8%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 67.0 5.73e-01 100.0% 65.4%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 66.0 5.74e-01 100.0% 75.6%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 56.0 5.53e-01 100.0% 76.8%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.74 55.0 5.75e-01 100.0% 89.1%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 66.0 6.40e-01 100.0% 94.6%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 65.0 6.25e-01 100.0% 89.7%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 64.0 6.03e-01 100.0% 83.9%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 63.0 5.96e-01 100.0% 86.9%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 63.0 6.06e-01 100.0% 86.4%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 61.0 5.93e-01 100.0% 91.4%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 60.0 5.87e-01 100.0% 91.2%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 60.0 5.57e-01 100.0% 92.5%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 59.0 5.38e-01 100.0% 73.6%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 60.0 5.31e-01 100.0% 74.0%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 60.0 5.61e-01 100.0% 79.7%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 61.0 5.83e-01 100.0% 88.1%
2eifA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 47.0 4.49e-01 70.6% 93.2%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 52.0 4.92e-01 100.0% 68.3%
3pvlA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 59.0 5.20e-01 100.0% 72.4%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.68 53.0 5.38e-01 100.0% 90.2%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 57.0 5.25e-01 100.0% 74.3%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 46.0 4.29e-01 72.5% 92.3%
2wacA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 48.0 3.72e-01 86.3% 63.5%
4glaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 44.0 3.78e-01 80.4% 88.8%
2ytyA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 41.0 3.47e-01 70.6% 72.7%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 4.67e-01 100.0% 80.0%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 48.0 3.71e-01 94.1% 50.0%
1bbuA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 41.0 3.16e-01 78.4% 55.0%
3luuA00 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.58 46.0 4.06e-01 100.0% 85.4%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 45.0 3.41e-01 92.2% 74.5%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 47.0 4.73e-01 100.0% 96.1%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 42.0 3.90e-01 84.3% 61.4%
1vw3B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 44.0 3.70e-01 86.3% 55.9%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 3.91e-01 100.0% 53.1%
4gouA02 2.30.29.200 Mainly Beta › Roll › PH-domain like › 0.56 45.0 3.32e-01 96.1% 45.6%
2pi2D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 44.0 3.43e-01 92.2% 71.5%
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.55 38.0 2.96e-01 100.0% 30.9%
2rghA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 44.0 2.89e-01 92.2% 62.2%
1chuA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 47.0 3.07e-01 100.0% 56.0%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 44.0 4.31e-01 96.1% 87.5%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.55 46.0 3.57e-01 98.0% 60.3%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 44.0 4.06e-01 100.0% 70.7%
4qq1C03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.54 39.0 3.41e-01 82.4% 86.4%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 42.0 3.50e-01 96.1% 56.5%
1kz7C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.29e-01 96.1% 71.5%
4nh0A03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 39.0 2.72e-01 94.1% 92.6%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 43.0 2.63e-01 100.0% 41.0%
2kcjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 42.0 3.47e-01 100.0% 78.7%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.37e-01 96.1% 51.4%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 41.0 3.48e-01 96.1% 92.7%
3dlsB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 43.0 3.53e-01 98.0% 83.7%
6g1yA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 36.0 2.87e-01 80.4% 67.5%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3517728 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.78 59.0 5.33e-01 100.0% 60.0%
3795223 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 59.0 4.97e-01 100.0% 49.4%
3505437 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.77 68.0 5.73e-01 100.0% 62.4%
3356591 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 59.0 4.78e-01 100.0% 45.3%
3494671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 53.0 5.60e-01 82.4% 84.4%
3939132 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 65.0 5.26e-01 100.0% 54.0%
3482868 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 66.0 6.45e-01 100.0% 92.7%
3763497 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.74 66.0 5.79e-01 100.0% 78.7%
3477037 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 65.0 5.91e-01 100.0% 81.4%
3416133 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 65.0 5.76e-01 100.0% 69.3%
3766868 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 65.0 5.38e-01 100.0% 60.0%
3486189 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 65.0 6.16e-01 100.0% 90.0%
3488995 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 64.0 5.97e-01 100.0% 83.1%
3474075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 65.0 5.74e-01 100.0% 75.7%
3786196 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 64.0 4.19e-01 100.0% 26.8%
3398464 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 64.0 6.26e-01 100.0% 92.7%
3749194 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.73 64.0 5.93e-01 100.0% 79.7%
3846212 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.73 63.0 5.48e-01 100.0% 65.0%
513 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 63.0 5.77e-01 100.0% 85.5%
3898672 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 62.0 5.71e-01 96.1% 75.4%
3226827 4.1.1.133 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_YG-box 0.72 59.0 4.72e-01 100.0% 44.8%
3275623 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 63.0 5.36e-01 100.0% 61.2%
3695780 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 64.0 5.49e-01 100.0% 65.0%
3921563 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.72 64.0 5.50e-01 100.0% 65.0%
3925642 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 63.0 5.07e-01 100.0% 54.0%
4138935 4.1.1.241 ↗ beta barrels › SH3 › SH3 › SH3 › NifZ 0.72 61.0 5.47e-01 100.0% 82.7%
3479037 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 64.0 5.49e-01 100.0% 63.7%
3413864 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.72 64.0 4.43e-01 100.0% 33.9%
3518287 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.72 62.0 4.83e-01 100.0% 46.1%
3507664 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 62.0 5.95e-01 100.0% 86.7%
3578855 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 62.0 5.35e-01 98.0% 62.5%
3890893 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 62.0 6.11e-01 100.0% 96.4%
3849311 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 62.0 5.91e-01 100.0% 86.7%
3398298 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 60.0 5.26e-01 98.0% 65.0%
3234947 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 62.0 5.74e-01 100.0% 80.0%
3879132 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 62.0 5.49e-01 100.0% 76.0%
3203654 601.16.1.12 ↗ alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › SH3_1 0.71 61.0 4.12e-01 100.0% 28.5%
3791430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 61.0 6.02e-01 98.0% 90.9%
3909317 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 61.0 6.19e-01 98.0% 100.0%
3506500 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.71 49.0 5.27e-01 82.4% 88.4%
3917464 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 61.0 5.71e-01 100.0% 83.1%
3488114 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 56.0 4.33e-01 100.0% 38.3%
3697262 601.1.1.120 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › SH3_9 0.71 61.0 4.13e-01 100.0% 29.2%
4019491 601.16.1.7 ↗ alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › SH3_9 0.70 61.0 4.06e-01 100.0% 27.8%
3789696 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 58.0 4.88e-01 100.0% 53.3%
3842441 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 60.0 5.78e-01 100.0% 86.7%
3570230 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 62.0 5.13e-01 100.0% 63.3%
3216746 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 60.0 5.93e-01 98.0% 90.9%
3523802 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 58.0 5.49e-01 100.0% 78.3%
4816818 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.69 50.0 5.18e-01 98.0% 85.1%
4962338 375.1.1.234 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_PaaD 0.69 50.0 5.35e-01 94.1% 100.0%
2717779 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.69 59.0 5.14e-01 100.0% 63.4%
3894798 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.68 54.0 5.63e-01 98.0% 97.8%
4130134 3468.1.1.1 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN 0.66 50.0 3.71e-01 84.3% 82.9%
3549369 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 56.0 5.38e-01 98.0% 88.3%
4021478 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 56.0 4.83e-01 100.0% 62.4%
5061113 375.1.1.299 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.65 54.0 5.31e-01 98.0% 87.3%
4019215 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.65 56.0 5.09e-01 100.0% 75.7%
4976092 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 54.0 4.60e-01 100.0% 55.6%
3549474 4.1.1.406 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-A_UBE2O 0.64 50.0 3.63e-01 100.0% 28.6%
3913637 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.64 54.0 4.51e-01 100.0% 54.4%
5035447 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 51.0 4.86e-01 100.0% 76.9%
4358761 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.62 43.0 4.01e-01 72.5% 90.8%
5072502 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 42.0 4.06e-01 70.6% 93.1%
2841823 4.1.1.114 ↗ beta barrels › SH3 › SH3 › SH3 › PSA_CBD 0.61 49.0 4.79e-01 92.2% 91.1%
3937216 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.60 47.0 3.59e-01 90.2% 65.4%
3717498 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 44.0 3.10e-01 96.1% 58.0%
3775000 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 43.0 3.24e-01 94.1% 60.0%
4405445 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 40.0 3.69e-01 94.1% 62.9%
3256497 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.52 40.0 2.99e-01 94.1% 47.9%
3349740 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 37.0 3.90e-01 96.1% 93.3%
3550232 389.1.1.1 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF 0.51 38.0 3.35e-01 84.3% 78.8%
4950397 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 43.0 4.21e-01 96.1% 98.2%