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RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00374
Bact-VirRifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00374
Identity
- Kingdom:
- phage
Quality
84.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-60
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1x4rA01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.65 | 38.0 | 3.46e-01 | 79.3% | 43.0% |
| 1h5pA00 | 3.10.390.10 | Alpha Beta › Roll › SAND domain › SAND domain-like | 0.62 | 49.0 | 4.26e-01 | 89.7% | 76.8% |
| 1wzoA01 | 2.30.30.370 | Mainly Beta › Roll › SH3 type barrels. › FAH | 0.62 | 40.0 | 4.41e-01 | 93.1% | 95.0% |
| 5h4eA02 | 3.30.920.50 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain | 0.61 | 49.0 | 4.01e-01 | 93.1% | 68.1% |
| 1tfkA00 | 3.10.450.200 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 50.0 | 4.30e-01 | 93.1% | 63.8% |
| 1t95A01 | 3.30.1250.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical 12.0 Kda Protein In Nam8-gar1 Intergenic Region; Chain: A; › Ribosome maturation protein SBDS, N-terminal domain | 0.60 | 48.0 | 4.40e-01 | 93.1% | 96.2% |
| 4psuA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.59 | 48.0 | 3.07e-01 | 89.7% | 31.8% |
| 1yx3A01 | 3.30.1420.10 | Alpha Beta › 2-Layer Sandwich › Dissimilatory Siroheme-sulfite Reductase; Chain: A; domain 1 › DsrC protein, N-terminal domain | 0.59 | 38.0 | 4.11e-01 | 87.9% | 92.7% |
| 3nm6B00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.57 | 42.0 | 2.84e-01 | 100.0% | 20.1% |
| 4r3dA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 39.0 | 3.06e-01 | 82.8% | 31.4% |
| 1igqB00 | 2.30.30.150 | Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain | 0.55 | 43.0 | 4.33e-01 | 94.8% | 89.5% |
| 2lleA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.55 | 39.0 | 2.71e-01 | 79.3% | 51.3% |
| 1yb2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 42.0 | 2.87e-01 | 86.2% | 69.6% |
| 1ji8A01 | 3.30.1420.10 | Alpha Beta › 2-Layer Sandwich › Dissimilatory Siroheme-sulfite Reductase; Chain: A; domain 1 › DsrC protein, N-terminal domain | 0.54 | 35.0 | 3.71e-01 | 89.7% | 80.9% |
| 1upsA02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.54 | 40.0 | 3.18e-01 | 82.8% | 46.6% |
| 2g18I00 | 3.40.1500.20 | Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › | 0.54 | 46.0 | 3.11e-01 | 100.0% | 77.7% |
| 4h0aA00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.53 | 42.0 | 2.77e-01 | 91.4% | 60.6% |
| 4h7wA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.52 | 45.0 | 3.22e-01 | 100.0% | 80.7% |
| 1l5jA02 | 3.20.19.10 | Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 | 0.52 | 41.0 | 2.82e-01 | 86.2% | 88.5% |
| 1sfeA01 | 3.30.160.70 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain | 0.52 | 39.0 | 3.64e-01 | 87.9% | 75.3% |
| 8e7cA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 42.0 | 3.84e-01 | 94.8% | 82.7% |
| 2ayaA00 | 3.30.300.150 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › DNA polymerase III, tau subunit, domain V | 0.51 | 43.0 | 3.41e-01 | 96.6% | 49.2% |
| 4pq0A02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 44.0 | 3.84e-01 | 100.0% | 83.9% |
| 4j9jA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 36.0 | 2.57e-01 | 79.3% | 48.5% |
| 2wi8A01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.51 | 40.0 | 3.21e-01 | 89.7% | 100.0% |
| 1ujrA01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.50 | 37.0 | 3.36e-01 | 82.8% | 81.9% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3645247 | 4357.1.1.6 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 | 0.72 | 42.0 | 3.72e-01 | 70.7% | 40.0% |
| 3313714 | 4.2.1.0 ↗ | beta barrels › SH3 › SAND › SAND | 0.71 | 57.0 | 5.23e-01 | 87.9% | 92.0% |
| 3880308 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.71 | 41.0 | 3.64e-01 | 79.3% | 41.2% |
| 3704287 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.70 | 45.0 | 4.32e-01 | 74.1% | 58.5% |
| 3432251 | 4.2.1.1 ↗ | beta barrels › SH3 › SAND › SAND › SAND | 0.70 | 55.0 | 5.24e-01 | 87.9% | 94.3% |
| 3656434 | 4.2.1.0 ↗ | beta barrels › SH3 › SAND › SAND | 0.68 | 56.0 | 5.34e-01 | 93.1% | 95.7% |
| 3254634 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.68 | 41.0 | 3.79e-01 | 70.7% | 46.7% |
| 3617714 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.68 | 40.0 | 3.66e-01 | 77.6% | 45.3% |
| 3800967 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.67 | 41.0 | 3.84e-01 | 79.3% | 50.0% |
| 3877833 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.67 | 39.0 | 3.47e-01 | 70.7% | 42.5% |
| 3581513 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.67 | 40.0 | 3.65e-01 | 79.3% | 43.8% |
| 3907820 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.66 | 39.0 | 3.60e-01 | 72.4% | 46.7% |
| 3337215 | 4357.1.1.6 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 | 0.66 | 39.0 | 3.40e-01 | 70.7% | 40.0% |
| 3453009 | 4357.1.1.6 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 | 0.65 | 38.0 | 3.38e-01 | 70.7% | 40.0% |
| 3907821 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.65 | 38.0 | 3.27e-01 | 70.7% | 37.8% |
| 3622446 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.65 | 39.0 | 3.69e-01 | 72.4% | 50.0% |
| 3914736 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.64 | 38.0 | 3.69e-01 | 72.4% | 52.3% |
| 3996720 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.63 | 39.0 | 3.65e-01 | 74.1% | 51.4% |
| 3457638 | 4357.1.1.6 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 | 0.62 | 38.0 | 3.27e-01 | 72.4% | 38.9% |
| 2323829 | 3484.1.1.2 ↗ | a+b two layers › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Glyco_hydro_64 | 0.61 | 49.0 | 3.68e-01 | 93.1% | 50.3% |
| 3412760 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 48.0 | 3.96e-01 | 87.9% | 85.7% |
| 3470449 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.60 | 40.0 | 3.67e-01 | 70.7% | 60.0% |
| 3214587 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.59 | 40.0 | 3.67e-01 | 70.7% | 61.3% |
| 3629097 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.59 | 41.0 | 3.49e-01 | 72.4% | 56.0% |
| 3758265 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.59 | 40.0 | 3.39e-01 | 70.7% | 48.0% |
| 3243117 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.59 | 41.0 | 3.46e-01 | 72.4% | 52.0% |
| 3985490 | 192.2.1.5 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 | 0.59 | 47.0 | 3.73e-01 | 89.7% | 56.5% |
| 3222419 | 331.23.1.0 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain | 0.57 | 39.0 | 3.59e-01 | 70.7% | 56.0% |
| 3597533 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.57 | 39.0 | 3.25e-01 | 74.1% | 60.0% |
| 3272453 | 6.1.1.7 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › CDtoxinA | 0.56 | 48.0 | 3.75e-01 | 100.0% | 58.5% |
| 3925092 | 5.1.11.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › RMC1_N | 0.55 | 48.0 | 2.92e-01 | 100.0% | 24.9% |
| 3572782 | 5.1.4.147 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RMC1_N | 0.54 | 46.0 | 2.88e-01 | 100.0% | 29.3% |
| 2132 | 6.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil | 0.54 | 40.0 | 3.19e-01 | 82.8% | 47.3% |
| 3578637 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.51 | 43.0 | 2.84e-01 | 100.0% | 54.8% |
| 3992641 | 331.4.1.9 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C | 0.51 | 40.0 | 3.81e-01 | 86.2% | 95.7% |
| 4614679 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 38.0 | 3.98e-01 | 87.9% | 100.0% |
| 3469277 | 4357.1.1.6 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 | 0.50 | 37.0 | 3.44e-01 | 86.2% | 84.7% |
| 907 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.50 | 37.0 | 3.10e-01 | 82.8% | 61.8% |