←Back to structures
RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00398
Bact-VirRifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00398
Identity
- Kingdom:
- phage
Quality
67.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-73
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4y2fA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.65 | 53.0 | 4.10e-01 | 93.2% | 80.4% |
| 1jrmA00 | 3.30.1200.10 | Alpha Beta › 2-Layer Sandwich › Conserved Hypothetical Protein Mth637; Chain: A; › YggU-like | 0.65 | 52.0 | 4.31e-01 | 88.1% | 51.9% |
| 4p72A04 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.65 | 45.0 | 4.26e-01 | 93.2% | 59.2% |
| 1vigA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.63 | 47.0 | 4.45e-01 | 81.4% | 69.0% |
| 2dgrA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.62 | 46.0 | 4.47e-01 | 81.4% | 73.1% |
| 1sqgA03 | 3.30.70.1170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 | 0.60 | 41.0 | 4.13e-01 | 81.4% | 72.4% |
| 4qmfD02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.60 | 43.0 | 3.79e-01 | 84.7% | 50.0% |
| 1vq8S00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.59 | 48.0 | 4.37e-01 | 89.8% | 97.5% |
| 1khmA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.59 | 43.0 | 3.88e-01 | 81.4% | 56.2% |
| 1we8A01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.59 | 46.0 | 4.12e-01 | 86.4% | 64.3% |
| 2ctkA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.59 | 43.0 | 3.69e-01 | 81.4% | 47.1% |
| 5w2fA01 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.58 | 42.0 | 3.77e-01 | 84.7% | 53.5% |
| 3zxoA00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.57 | 40.0 | 3.22e-01 | 74.6% | 95.2% |
| 2hh2A00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.57 | 44.0 | 4.05e-01 | 86.4% | 69.6% |
| 3upsA00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.57 | 41.0 | 3.51e-01 | 81.4% | 82.4% |
| 2ctlA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.56 | 40.0 | 3.50e-01 | 78.0% | 51.5% |
| 1j4wA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.55 | 41.0 | 3.88e-01 | 83.1% | 67.6% |
| 2cteA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.54 | 42.0 | 3.86e-01 | 86.4% | 64.6% |
| 3cz8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.51 | 34.0 | 3.45e-01 | 98.3% | 68.4% |
| 4akgA04 | 1.20.58.1120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 | 0.51 | 42.0 | 3.19e-01 | 96.6% | 95.5% |
| 2pt7G02 | 3.30.1370.180 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.51 | 38.0 | 3.72e-01 | 83.1% | 92.5% |
| 2i0zA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 43.0 | 2.85e-01 | 100.0% | 71.2% |
ECOD (63)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4197044 | 3433.1.2.0 ↗ | a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain | 0.74 | 52.0 | 5.63e-01 | 74.6% | 90.0% |
| 4124100 | 3433.1.2.1 ↗ | a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer | 0.73 | 52.0 | 5.82e-01 | 74.6% | 100.0% |
| 4947881 | 101.1.9.153 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › tRNA_synthFbeta | 0.69 | 51.0 | 4.61e-01 | 93.2% | 56.5% |
| 3508538 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.67 | 50.0 | 4.51e-01 | 79.7% | 58.7% |
| 3792790 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.66 | 50.0 | 4.41e-01 | 93.2% | 54.4% |
| 3585868 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.65 | 49.0 | 4.38e-01 | 81.4% | 61.2% |
| 3476172 | 304.127.1.0 ↗ | a+b two layers › Alpha-beta plaits › Notch heterodimerization domain › Notch heterodimerization domain | 0.65 | 52.0 | 4.04e-01 | 86.4% | 64.6% |
| 3213701 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.65 | 48.0 | 4.23e-01 | 81.4% | 55.6% |
| 3317376 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.64 | 47.0 | 3.93e-01 | 81.4% | 59.1% |
| 4182104 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.64 | 48.0 | 4.15e-01 | 84.7% | 51.6% |
| 3596068 | 306.3.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like | 0.64 | 46.0 | 4.04e-01 | 84.7% | 51.1% |
| 3264101 | 4261.1.1.2 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › BK_channel_a | 0.64 | 50.0 | 4.08e-01 | 88.1% | 55.7% |
| 3380460 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.63 | 47.0 | 3.95e-01 | 81.4% | 56.2% |
| 3920144 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.63 | 46.0 | 3.96e-01 | 81.4% | 52.0% |
| 3813425 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.63 | 46.0 | 3.76e-01 | 81.4% | 67.5% |
| 3798234 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.63 | 46.0 | 3.95e-01 | 81.4% | 52.0% |
| 3515783 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.62 | 46.0 | 4.00e-01 | 81.4% | 52.6% |
| 3931079 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.62 | 46.0 | 4.00e-01 | 81.4% | 56.8% |
| 3628199 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.62 | 46.0 | 3.94e-01 | 81.4% | 52.0% |
| 3756621 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.62 | 46.0 | 4.23e-01 | 81.4% | 65.0% |
| 4027654 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.62 | 46.0 | 4.29e-01 | 81.4% | 66.7% |
| 3739576 | 327.11.2.27 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin | 0.62 | 46.0 | 4.75e-01 | 84.7% | 87.3% |
| 3324140 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.62 | 45.0 | 3.91e-01 | 81.4% | 58.0% |
| 5024998 | 4271.1.1.3 ↗ | alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N | 0.61 | 53.0 | 3.66e-01 | 100.0% | 42.9% |
| 3296288 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.61 | 45.0 | 3.75e-01 | 81.4% | 60.0% |
| 3786786 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.61 | 45.0 | 4.07e-01 | 81.4% | 58.8% |
| 3880966 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.61 | 45.0 | 4.21e-01 | 81.4% | 68.0% |
| 3499589 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.61 | 45.0 | 3.87e-01 | 81.4% | 55.0% |
| 3602251 | 6132.1.1.0 ↗ | alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain | 0.61 | 36.0 | 3.25e-01 | 89.8% | 41.2% |
| 3374317 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.61 | 45.0 | 3.91e-01 | 81.4% | 61.1% |
| 3814809 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.60 | 45.0 | 3.73e-01 | 81.4% | 63.6% |
| 3800751 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.60 | 44.0 | 3.95e-01 | 81.4% | 60.0% |
| 3433819 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.60 | 45.0 | 3.89e-01 | 81.4% | 62.1% |
| 3798411 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.60 | 45.0 | 4.03e-01 | 81.4% | 61.2% |
| 3486660 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.60 | 44.0 | 3.87e-01 | 81.4% | 52.6% |
| 3362546 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.60 | 44.0 | 3.88e-01 | 81.4% | 62.1% |
| 3297269 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.60 | 44.0 | 3.71e-01 | 81.4% | 57.3% |
| 3683469 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.60 | 44.0 | 3.70e-01 | 81.4% | 61.8% |
| 3517855 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.60 | 44.0 | 4.13e-01 | 81.4% | 69.3% |
| 3627507 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.60 | 44.0 | 3.98e-01 | 81.4% | 61.2% |
| 3190999 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.60 | 43.0 | 2.73e-01 | 78.0% | 25.8% |
| 4014111 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.59 | 44.0 | 3.81e-01 | 81.4% | 52.6% |
| 3682464 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.59 | 43.0 | 4.17e-01 | 81.4% | 68.6% |
| 4025573 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.59 | 43.0 | 3.86e-01 | 81.4% | 57.8% |
| 3739596 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.59 | 43.0 | 4.15e-01 | 81.4% | 68.6% |
| 3512920 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.58 | 43.0 | 3.86e-01 | 81.4% | 55.6% |
| 3690646 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.58 | 43.0 | 3.64e-01 | 81.4% | 47.6% |
| 3555254 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.58 | 45.0 | 4.12e-01 | 86.4% | 63.7% |
| 3573665 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.58 | 43.0 | 3.83e-01 | 81.4% | 58.9% |
| 3781976 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.58 | 43.0 | 3.87e-01 | 81.4% | 58.8% |
| 3798409 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.58 | 45.0 | 4.13e-01 | 86.4% | 66.3% |
| 3212174 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.58 | 44.0 | 4.02e-01 | 86.4% | 62.4% |
| 4302446 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.58 | 42.0 | 3.71e-01 | 81.4% | 52.6% |
| 3739592 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.58 | 42.0 | 4.01e-01 | 81.4% | 69.3% |
| 3913832 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.58 | 42.0 | 4.09e-01 | 81.4% | 68.6% |
| 3212979 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.58 | 45.0 | 3.89e-01 | 86.4% | 55.8% |
| 3783526 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.58 | 41.0 | 4.08e-01 | 81.4% | 72.3% |
| 4061435 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.57 | 42.0 | 3.45e-01 | 81.4% | 43.5% |
| 3171979 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.56 | 41.0 | 3.67e-01 | 81.4% | 55.6% |
| 3278001 | 211.1.1.11 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_6 | 0.55 | 40.0 | 3.21e-01 | 81.4% | 90.8% |
| 4069782 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 38.0 | 2.62e-01 | 79.7% | 80.0% |
| 5023590 | 873.1.1.1 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R | 0.53 | 43.0 | 3.42e-01 | 93.2% | 43.7% |
| 3865493 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.53 | 46.0 | 2.99e-01 | 100.0% | 44.6% |