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RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00405
Bact-VirRifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00405
Identity
- Kingdom:
- phage
Quality
91.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-119
Domain cluster:
rep: CAKLQF020000006.1__CAH1080324.1__SAMEA5780031_01553__00195__D2-96
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gb5A01 | 3.90.79.20 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › | 0.59 | 34.0 | 3.32e-01 | 100.0% | 49.6% |
| 4uhvA03 | 4.10.220.110 | Few Secondary Structures › Irregular › Light-harvesting Protein › | 0.51 | 29.0 | 3.60e-01 | 89.7% | 100.0% |
| 1vwxk00 | 3.30.720.90 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.51 | 25.0 | 3.05e-01 | 96.6% | 72.5% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3741375 | 239.3.1.0 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain | 0.59 | 37.0 | 3.58e-01 | 93.1% | 54.8% |
| 4487623 | 221.4.1.27 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › Zn_ribbon_NUD | 0.56 | 34.0 | 3.50e-01 | 100.0% | 61.7% |
| 3321854 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.53 | 38.0 | 3.69e-01 | 74.1% | 92.3% |
| 3175567 | 3541.1.1.1 ↗ | beta sandwiches › Atg29-Atg31 › Atg29-Atg31 › Atg29-Atg31 › ATG31 | 0.50 | 37.0 | 3.89e-01 | 77.6% | 84.3% |
D2
high
residues 147-331
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4etrB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 27.0 | 3.31e-01 | 73.5% | 73.0% |
| 3fseB02 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 31.0 | 3.43e-01 | 73.5% | 72.2% |
| 3kavA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.52 | 29.0 | 3.81e-01 | 70.8% | 100.0% |
| 1yo7A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.51 | 31.0 | 3.73e-01 | 73.5% | 90.8% |
| 4lixA03 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 42.0 | 3.93e-01 | 89.7% | 92.4% |