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RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00442
Bact-VirRifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00442
Identity
- Kingdom:
- phage
Quality
70.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-57
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cjsC01 | 3.30.60.120 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.80 | 53.0 | 6.17e-01 | 71.4% | 100.0% |
| 1zbdB00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.72 | 52.0 | 3.97e-01 | 75.0% | 36.6% |
| 2vp7A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.72 | 54.0 | 5.12e-01 | 85.7% | 68.2% |
| 2xb1A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.71 | 54.0 | 4.50e-01 | 87.5% | 47.9% |
| 4qf3A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.68 | 49.0 | 4.97e-01 | 91.1% | 78.9% |
| 4uf0A03 | 2.10.110.20 | Mainly Beta › Ribbon › Cysteine Rich Protein › | 0.67 | 56.0 | 5.37e-01 | 94.6% | 80.0% |
| 4ccgY00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.67 | 50.0 | 4.77e-01 | 82.1% | 100.0% |
| 2d8yA01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.67 | 50.0 | 4.58e-01 | 85.7% | 62.5% |
| 2rowA01 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.66 | 45.0 | 4.17e-01 | 71.4% | 56.3% |
| 2m6mA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.64 | 52.0 | 4.64e-01 | 91.1% | 90.4% |
| 2miuA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.64 | 46.0 | 3.88e-01 | 83.9% | 44.9% |
| 2dloA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.64 | 48.0 | 4.29e-01 | 82.1% | 70.4% |
| 3ng2B00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.63 | 45.0 | 4.34e-01 | 78.6% | 65.7% |
| 5d1kB01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.63 | 47.0 | 4.28e-01 | 82.1% | 89.6% |
| 3o58V00 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.63 | 44.0 | 4.33e-01 | 73.2% | 69.5% |
| 1x6aA01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.61 | 45.0 | 4.45e-01 | 82.1% | 93.5% |
| 5feyA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.60 | 51.0 | 4.68e-01 | 98.2% | 85.9% |
| 1z2qA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.60 | 45.0 | 3.88e-01 | 78.6% | 58.3% |
| 3t7lA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.60 | 45.0 | 4.13e-01 | 80.4% | 85.1% |
| 2fd4A00 | 3.30.40.110 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › AvrPtoB, C-terminal domain | 0.60 | 51.0 | 4.23e-01 | 100.0% | 79.0% |
| 5tdrA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.60 | 40.0 | 3.83e-01 | 85.7% | 57.1% |
| 2nrjA01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.50 | 42.0 | 2.63e-01 | 96.4% | 93.3% |
ECOD (66)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4882574 | 375.1.1.35 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › HVO_2753_ZBP | 0.76 | 52.0 | 5.20e-01 | 71.4% | 72.4% |
| 3331318 | 376.1.1.40 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_11 | 0.75 | 50.0 | 4.82e-01 | 73.2% | 60.0% |
| 3301384 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.74 | 52.0 | 5.25e-01 | 73.2% | 76.4% |
| 3271441 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.73 | 55.0 | 5.55e-01 | 80.4% | 81.8% |
| 3887134 | 376.1.3.55 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PF27108 | 0.72 | 54.0 | 5.02e-01 | 85.7% | 64.3% |
| 3237892 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.71 | 51.0 | 5.01e-01 | 75.0% | 78.3% |
| 4976747 | 109.4.1.5 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 | 0.71 | 52.0 | 3.26e-01 | 78.6% | 16.2% |
| 3738593 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.71 | 55.0 | 5.01e-01 | 85.7% | 92.0% |
| 396703 | 376.1.3.55 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PF27108 | 0.70 | 54.0 | 4.52e-01 | 89.3% | 48.5% |
| 4940846 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.70 | 49.0 | 4.85e-01 | 73.2% | 72.9% |
| 3389496 | 376.1.1.103 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_Vps41 | 0.70 | 48.0 | 4.86e-01 | 71.4% | 72.7% |
| 3815926 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.70 | 49.0 | 4.94e-01 | 73.2% | 81.8% |
| 5071927 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.69 | 48.0 | 4.84e-01 | 73.2% | 74.5% |
| 3610304 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.69 | 57.0 | 5.19e-01 | 91.1% | 92.0% |
| 4945028 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.69 | 46.0 | 4.24e-01 | 75.0% | 52.7% |
| 4668973 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.69 | 55.0 | 4.82e-01 | 89.3% | 87.1% |
| 4249713 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.68 | 54.0 | 3.53e-01 | 87.5% | 28.0% |
| 5031996 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.68 | 48.0 | 4.85e-01 | 73.2% | 76.4% |
| 3626567 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.68 | 45.0 | 4.11e-01 | 73.2% | 50.7% |
| 3620075 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.68 | 59.0 | 5.00e-01 | 100.0% | 83.2% |
| 3272328 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.68 | 58.0 | 4.93e-01 | 94.6% | 74.4% |
| 3937568 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.68 | 54.0 | 4.73e-01 | 89.3% | 87.1% |
| 3295801 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.68 | 44.0 | 3.84e-01 | 73.2% | 42.2% |
| 3923870 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.68 | 49.0 | 5.15e-01 | 92.9% | 88.0% |
| 3203763 | 376.1.1.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ | 0.68 | 56.0 | 5.24e-01 | 92.9% | 97.1% |
| 3174995 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.67 | 50.0 | 4.03e-01 | 80.4% | 82.7% |
| 4970980 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.67 | 48.0 | 4.64e-01 | 76.8% | 74.6% |
| 4354093 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.67 | 56.0 | 4.82e-01 | 94.6% | 85.6% |
| 5049855 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.67 | 45.0 | 4.50e-01 | 80.4% | 66.7% |
| 4298719 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.67 | 54.0 | 4.58e-01 | 92.9% | 77.0% |
| 3355649 | 376.1.1.40 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_11 | 0.67 | 40.0 | 4.47e-01 | 76.8% | 82.5% |
| 3463525 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.67 | 48.0 | 4.87e-01 | 82.1% | 78.2% |
| 3611690 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.67 | 54.0 | 4.85e-01 | 91.1% | 85.0% |
| 3689283 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.67 | 58.0 | 4.97e-01 | 100.0% | 87.1% |
| 3301048 | 376.1.1.19 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv | 0.66 | 45.0 | 4.97e-01 | 71.4% | 100.0% |
| 4016561 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.66 | 56.0 | 5.36e-01 | 94.6% | 96.9% |
| 3430914 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.66 | 56.0 | 5.32e-01 | 94.6% | 80.0% |
| 3718306 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.66 | 57.0 | 4.42e-01 | 100.0% | 60.0% |
| 3916183 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 45.0 | 2.51e-01 | 80.4% | 5.7% |
| 4977157 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.65 | 45.0 | 4.91e-01 | 75.0% | 88.9% |
| 3207641 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.65 | 50.0 | 4.39e-01 | 83.9% | 76.5% |
| 5076504 | 376.1.1.183 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Prok-RING_1 | 0.65 | 45.0 | 4.69e-01 | 80.4% | 82.0% |
| 3525801 | 6171.1.1.0 ↗ | alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases | 0.65 | 56.0 | 4.04e-01 | 98.2% | 68.5% |
| 3414566 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.65 | 48.0 | 4.07e-01 | 80.4% | 68.4% |
| 3369709 | 376.1.1.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ | 0.65 | 55.0 | 4.96e-01 | 92.9% | 81.3% |
| 1288950 | 376.1.1.19 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv | 0.64 | 52.0 | 4.64e-01 | 91.1% | 90.4% |
| 4026105 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.64 | 48.0 | 4.26e-01 | 80.4% | 91.3% |
| 3691500 | 376.1.1.19 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv | 0.64 | 46.0 | 4.53e-01 | 76.8% | 83.3% |
| 3740227 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.64 | 47.0 | 4.36e-01 | 78.6% | 90.0% |
| 3194530 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.64 | 51.0 | 4.05e-01 | 92.9% | 73.6% |
| 3335299 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.63 | 54.0 | 4.32e-01 | 100.0% | 91.5% |
| 3365955 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.63 | 52.0 | 4.90e-01 | 92.9% | 88.6% |
| 4586910 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.63 | 54.0 | 4.94e-01 | 100.0% | 97.3% |
| 3609616 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.63 | 53.0 | 4.32e-01 | 100.0% | 92.1% |
| 3539528 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.62 | 53.0 | 4.49e-01 | 100.0% | 90.9% |
| 3226581 | 376.1.1.19 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv | 0.62 | 47.0 | 4.67e-01 | 83.9% | 100.0% |
| 4300779 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.62 | 54.0 | 4.65e-01 | 100.0% | 94.4% |
| 3931770 | 376.1.1.14 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › UPF1_Zn_bind | 0.61 | 52.0 | 4.80e-01 | 100.0% | 72.0% |
| 3895601 | 376.1.1.78 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Zf_2nd_IFT121 | 0.60 | 49.0 | 4.28e-01 | 98.2% | 72.6% |
| 165079 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.60 | 42.0 | 4.02e-01 | 76.8% | 62.3% |
| 3578684 | 904.1.1.0 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain | 0.60 | 49.0 | 4.70e-01 | 94.6% | 84.6% |
| 4529868 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 48.0 | 4.16e-01 | 96.4% | 61.1% |
| 3250122 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 51.0 | 4.25e-01 | 100.0% | 65.0% |
| 4929359 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.51 | 42.0 | 4.32e-01 | 94.6% | 100.0% |
| 5061097 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.51 | 41.0 | 3.71e-01 | 96.4% | 92.9% |
| 3783969 | 376.1.3.18 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD_5 | 0.51 | 41.0 | 3.65e-01 | 89.3% | 75.0% |