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RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00470

Bact-Vir

RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00470

Identity

Kingdom:
phage

Quality

84.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-103
PDB
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.85 52.0 5.49e-01 100.0% 69.0%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.84 52.0 5.82e-01 100.0% 79.0%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.84 52.0 5.39e-01 100.0% 68.1%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.81 46.0 5.68e-01 100.0% 91.7%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 52.0 5.71e-01 100.0% 83.9%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 47.0 5.25e-01 98.7% 79.7%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.75 42.0 4.77e-01 97.4% 72.1%
1m9sA04 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.74 62.0 6.05e-01 100.0% 82.6%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 42.0 4.89e-01 100.0% 83.0%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 50.0 5.27e-01 100.0% 80.0%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 48.0 3.98e-01 100.0% 39.8%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 46.0 4.87e-01 100.0% 72.9%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.71 49.0 5.37e-01 100.0% 88.9%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 48.0 5.25e-01 100.0% 88.7%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 48.0 4.87e-01 100.0% 71.8%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 50.0 5.45e-01 100.0% 92.2%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 47.0 5.05e-01 100.0% 84.8%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 49.0 5.23e-01 100.0% 88.2%
1clwA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.68 38.0 2.23e-01 75.6% 7.9%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 4.82e-01 100.0% 76.0%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 48.0 5.15e-01 100.0% 91.0%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 48.0 5.04e-01 100.0% 88.6%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 41.0 4.36e-01 100.0% 75.4%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 50.0 5.36e-01 100.0% 98.5%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.63 47.0 3.94e-01 100.0% 46.2%
1vw3B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 46.0 4.30e-01 75.6% 96.8%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 43.0 4.99e-01 78.2% 100.0%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.62 44.0 3.58e-01 100.0% 39.1%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 39.0 4.31e-01 100.0% 84.7%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 35.0 4.33e-01 97.4% 93.9%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.60 44.0 4.27e-01 100.0% 68.9%
3k2tA01 3.30.505.50 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain 0.60 34.0 4.15e-01 73.1% 95.7%
4bwgD00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 45.0 4.28e-01 84.6% 97.9%
4oelB00 2.40.50.170 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C 0.59 37.0 3.93e-01 93.6% 72.5%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 41.0 4.19e-01 82.1% 74.4%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.58 46.0 4.77e-01 100.0% 89.2%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 39.0 4.07e-01 100.0% 78.1%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 39.0 4.15e-01 79.5% 86.4%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 39.0 3.98e-01 76.9% 78.4%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 38.0 4.28e-01 87.2% 100.0%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.55 44.0 4.27e-01 100.0% 78.9%
3dueA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.55 36.0 3.16e-01 97.4% 42.5%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.54 36.0 3.73e-01 100.0% 75.7%
5w3xD01 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.54 39.0 4.20e-01 88.5% 90.8%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 41.0 3.75e-01 83.3% 80.2%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 38.0 4.09e-01 79.5% 90.9%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.53 40.0 4.10e-01 100.0% 84.2%
3oxhA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 42.0 3.55e-01 88.5% 83.2%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 36.0 3.87e-01 73.1% 83.6%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 38.0 3.98e-01 100.0% 83.6%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 3.69e-01 93.6% 90.6%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.52 41.0 3.49e-01 89.7% 65.2%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 42.0 3.96e-01 93.6% 87.9%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.91e-01 93.6% 78.4%
1jqpA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.50 44.0 3.21e-01 100.0% 34.6%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 41.0 3.64e-01 93.6% 77.7%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4241924 4.1.1.93 beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.90 54.0 5.14e-01 100.0% 53.3%
3917372 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.86 52.0 5.38e-01 100.0% 64.0%
4271974 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.86 53.0 5.82e-01 100.0% 76.6%
3660964 4.1.1.6 beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.86 53.0 4.79e-01 100.0% 49.0%
5026824 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.85 51.0 5.43e-01 100.0% 68.6%
5022848 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 53.0 6.01e-01 100.0% 83.3%
4888987 4.1.1.6 beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.84 52.0 5.53e-01 100.0% 71.0%
5073368 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 54.0 5.69e-01 100.0% 72.9%
3597255 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 52.0 5.04e-01 100.0% 57.6%
4629735 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 53.0 5.76e-01 100.0% 76.9%
3698762 4.1.1.6 beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.84 52.0 4.65e-01 100.0% 47.6%
4300449 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.83 52.0 5.73e-01 100.0% 76.9%
5052257 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 49.0 5.51e-01 100.0% 76.7%
4170983 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 58.0 5.98e-01 100.0% 77.3%
4593997 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 51.0 5.57e-01 100.0% 76.9%
3742938 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.81 53.0 5.72e-01 100.0% 80.0%
5075469 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.81 51.0 5.53e-01 100.0% 76.9%
4161673 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.80 49.0 4.77e-01 100.0% 56.5%
4971532 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 50.0 5.30e-01 100.0% 71.4%
4071917 4.1.1.111 beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.79 46.0 5.52e-01 100.0% 90.0%
4945344 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 46.0 2.96e-01 100.0% 13.8%
4943273 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 49.0 5.38e-01 100.0% 76.9%
5065184 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 40.0 5.08e-01 94.9% 86.7%
4000622 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.74 49.0 4.17e-01 100.0% 44.2%
3768116 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.73 49.0 3.49e-01 100.0% 24.7%
3553413 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.73 49.0 4.74e-01 100.0% 62.4%
3511007 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.73 51.0 4.42e-01 100.0% 47.5%
3616769 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.73 48.0 4.50e-01 100.0% 55.8%
3794500 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.73 48.0 3.60e-01 100.0% 28.6%
3581817 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.72 48.0 5.23e-01 100.0% 81.5%
3694693 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.72 47.0 5.12e-01 84.6% 80.0%
4038705 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.70 53.0 5.78e-01 100.0% 96.9%
4929550 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.70 47.0 4.96e-01 100.0% 77.1%
3617741 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 49.0 3.59e-01 74.4% 52.2%
4452123 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 61.0 5.60e-01 98.7% 89.0%
3794445 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 49.0 4.89e-01 100.0% 75.0%
3720660 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 47.0 4.83e-01 100.0% 76.0%
591 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.67 47.0 4.80e-01 100.0% 75.0%
4207556 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.66 52.0 5.42e-01 100.0% 95.7%
4505316 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 43.0 4.85e-01 100.0% 88.3%
4399169 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.66 43.0 4.81e-01 88.5% 86.7%
3932586 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.65 46.0 3.62e-01 96.2% 35.6%
2641776 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.65 47.0 3.92e-01 74.4% 80.5%
4341478 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.65 46.0 4.49e-01 74.4% 81.2%
4602962 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.65 46.0 3.67e-01 74.4% 72.0%
4973274 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.64 42.0 4.96e-01 88.5% 96.4%
4598956 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 46.0 4.20e-01 75.6% 86.7%
3709493 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 45.0 3.83e-01 74.4% 73.8%
3411042 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.64 45.0 5.05e-01 100.0% 95.0%
3784770 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.64 51.0 5.24e-01 100.0% 88.0%
4028381 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.64 46.0 4.15e-01 75.6% 66.7%
4160115 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.63 46.0 3.89e-01 75.6% 79.2%
4504508 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.63 45.0 4.45e-01 75.6% 82.4%
5067458 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 39.0 4.47e-01 96.2% 92.7%
4149372 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 43.0 4.68e-01 83.3% 90.8%
4123449 4.8.1.35 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 0.59 44.0 4.35e-01 97.4% 72.9%
4034031 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.57 41.0 4.37e-01 100.0% 89.2%
3923839 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 46.0 4.88e-01 93.6% 97.1%
3881397 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.56 36.0 4.09e-01 89.7% 92.7%
5023580 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 38.0 4.06e-01 94.9% 89.2%
3291057 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 39.0 4.11e-01 96.2% 87.1%
3257931 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.53 39.0 3.70e-01 78.2% 100.0%
3600338 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 35.0 3.47e-01 97.4% 65.0%
3263954 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 44.0 3.80e-01 94.9% 73.8%
3627778 220.1.1.64 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.53 43.0 4.02e-01 93.6% 87.0%
3601553 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.52 46.0 3.01e-01 100.0% 31.5%
3810543 220.1.1.20 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.51 43.0 3.86e-01 93.6% 82.7%
3899072 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.51 36.0 3.80e-01 79.5% 84.3%
3606266 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 44.0 2.66e-01 96.2% 23.9%
3924612 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.50 42.0 3.53e-01 93.6% 61.5%