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RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00483

Bact-Vir

RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00483

Identity

Kingdom:
phage

Quality

95.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-136
PDB
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4o1pD02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.73 61.0 4.87e-01 87.3% 63.3%
4m69A00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.73 59.0 4.57e-01 85.8% 50.9%
3havA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.71 45.0 5.40e-01 91.0% 95.5%
2pulB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.71 48.0 5.63e-01 89.6% 98.9%
3vwaA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 41.0 4.80e-01 70.1% 96.7%
4r78A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 42.0 4.82e-01 74.6% 100.0%
3i1aA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 44.0 4.95e-01 82.8% 100.0%
3va7A05 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.59 40.0 4.49e-01 88.8% 92.0%
5mw8A01 3.30.200.110 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Inositol-pentakisphosphate 2-kinase, N-lobe 0.59 42.0 4.54e-01 73.1% 95.6%
2grvA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.59 40.0 4.31e-01 78.4% 82.3%
1xkpB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 39.0 4.08e-01 82.1% 78.5%
2p92A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.56 32.0 3.69e-01 94.0% 77.9%
1dcoA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.56 34.0 3.80e-01 79.1% 79.8%
3l4jA04 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.55 38.0 4.23e-01 94.0% 93.1%
6liuC02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 36.0 3.80e-01 79.9% 76.7%
3qx3B03 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.54 37.0 4.15e-01 93.3% 93.0%
1usmA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.54 31.0 3.89e-01 78.4% 98.7%
4btfA03 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 37.0 3.99e-01 85.1% 84.8%
2ebbA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.54 34.0 3.82e-01 79.9% 86.5%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.52 21.0 3.18e-01 89.6% 100.0%
1ry9A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 38.0 3.84e-01 89.6% 78.2%
1jyoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 37.0 3.78e-01 89.6% 77.7%
3tu3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.50 36.0 3.79e-01 88.8% 83.2%
4g6tA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.50 37.0 3.77e-01 89.6% 78.9%
2joeA01 3.30.1830.10 Alpha Beta › 2-Layer Sandwich › YehR-like fold › YehR-like 0.50 36.0 3.68e-01 73.9% 84.4%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3180087 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.79 66.0 4.82e-01 87.3% 46.8%
3938002 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.78 64.0 4.95e-01 85.8% 53.8%
3623819 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.77 67.0 5.00e-01 91.0% 54.1%
3536870 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.76 63.0 4.60e-01 85.8% 47.3%
3758771 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.76 62.0 4.55e-01 85.8% 45.9%
3185738 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.76 62.0 4.56e-01 85.1% 44.3%
3258903 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.76 62.0 4.92e-01 85.8% 56.9%
3601465 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.76 65.0 4.65e-01 91.8% 63.0%
4956914 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.75 63.0 5.12e-01 88.8% 60.8%
3268152 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.75 61.0 4.53e-01 85.8% 44.5%
3629867 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.75 68.0 5.01e-01 96.3% 50.8%
3583235 206.1.1.72 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.75 69.0 5.06e-01 98.5% 50.4%
3497561 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.75 66.0 4.77e-01 94.0% 57.7%
1166198 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.75 60.0 5.97e-01 85.1% 98.6%
3472954 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.75 61.0 4.44e-01 85.8% 42.6%
3496466 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.75 61.0 4.51e-01 85.8% 45.2%
3369097 206.1.1.72 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.74 63.0 4.68e-01 89.6% 46.6%
3625355 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.74 69.0 5.11e-01 99.3% 54.4%
3179623 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.73 59.0 4.40e-01 85.1% 48.6%
4482585 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.73 62.0 4.68e-01 90.3% 70.5%
5001154 206.1.1.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.73 54.0 4.86e-01 76.9% 70.6%
3907200 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.71 64.0 3.99e-01 96.3% 24.4%
4136484 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.71 61.0 4.72e-01 92.5% 69.7%
5012541 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.70 62.0 5.40e-01 94.0% 76.4%
5062640 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.70 60.0 4.56e-01 91.0% 69.3%
3256836 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.70 64.0 4.75e-01 97.0% 52.7%
4958423 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.70 60.0 5.09e-01 92.5% 65.1%
4972317 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.70 65.0 5.20e-01 100.0% 66.3%
3252765 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.70 41.0 4.18e-01 100.0% 58.5%
5048945 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 38.0 3.97e-01 100.0% 57.6%
4971345 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 37.0 4.27e-01 100.0% 70.0%
3814388 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.68 63.0 4.50e-01 99.3% 42.7%
3659272 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.68 64.0 4.90e-01 100.0% 64.6%
3290844 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.68 61.0 4.49e-01 97.8% 68.0%
4253589 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.68 40.0 4.10e-01 100.0% 60.0%
3540091 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.67 63.0 4.54e-01 100.0% 45.6%
3517850 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.67 62.0 4.81e-01 99.3% 68.9%
5032985 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.67 62.0 5.02e-01 100.0% 62.5%
3700651 206.1.1.15 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Fructosamin_kin 0.66 61.0 4.67e-01 99.3% 75.9%
3987244 206.1.1.10 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.66 61.0 4.70e-01 100.0% 69.5%
5052949 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 38.0 3.93e-01 100.0% 60.0%
None 0.65 53.0 3.56e-01 85.8% 35.0%
5047213 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 37.0 3.92e-01 100.0% 60.5%
5048098 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 37.0 3.90e-01 100.0% 60.0%
5067728 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.65 60.0 4.91e-01 100.0% 66.3%
3273196 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.65 42.0 4.05e-01 100.0% 58.0%
3827247 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.65 60.0 4.57e-01 100.0% 56.6%
5065384 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.65 37.0 3.95e-01 100.0% 63.0%
4649120 206.1.2.4 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › Ins_P5_2-kin 0.65 60.0 4.62e-01 100.0% 88.8%
3832328 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.64 59.0 4.41e-01 100.0% 56.2%
3677555 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.64 59.0 4.34e-01 100.0% 43.5%
4187379 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 38.0 3.97e-01 100.0% 65.0%
4946840 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 37.0 3.95e-01 100.0% 65.2%
4031201 206.1.1.15 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Fructosamin_kin 0.63 58.0 4.56e-01 100.0% 73.9%
2393360 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 37.0 3.90e-01 100.0% 63.9%
3734170 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.63 55.0 4.63e-01 93.3% 76.3%
3732255 206.1.1.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.63 57.0 4.66e-01 100.0% 82.0%
2393363 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.63 39.0 3.95e-01 100.0% 61.8%
5078711 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 36.0 3.82e-01 100.0% 62.5%
5000056 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 36.0 3.84e-01 100.0% 63.3%
5073723 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 36.0 3.83e-01 100.0% 63.9%
4971040 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 36.0 3.82e-01 100.0% 64.4%
2881936 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.60 35.0 3.47e-01 100.0% 53.1%
1309075 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.59 52.0 5.22e-01 94.8% 100.0%
3676867 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.57 52.0 3.86e-01 100.0% 65.5%
None 0.57 48.0 3.45e-01 92.5% 34.3%
4064881 241.1.1.7 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Type_III_SycN 0.56 39.0 4.04e-01 82.1% 77.2%
3199320 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.56 36.0 3.82e-01 89.6% 74.8%
3971872 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.53 39.0 4.02e-01 88.8% 82.9%
4028075 5.1.4.255 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2, WD40_RLD 0.52 43.0 3.03e-01 100.0% 27.8%
149453 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.50 36.0 3.76e-01 89.6% 81.8%
4025870 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.50 29.0 3.69e-01 74.6% 100.0%