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RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00484
Bact-VirRifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00484
Identity
- Kingdom:
- phage
Quality
93.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 43-103
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4dq2A03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.82 | 56.0 | 6.23e-01 | 96.7% | 93.6% |
| 1wzoA01 | 2.30.30.370 | Mainly Beta › Roll › SH3 type barrels. › FAH | 0.72 | 45.0 | 5.28e-01 | 98.4% | 97.5% |
| 2p4tA00 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 54.0 | 5.50e-01 | 100.0% | 87.9% |
| 2f5kA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 51.0 | 5.49e-01 | 95.1% | 100.0% |
| 2qw7C00 | 2.40.50.220 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml | 0.66 | 50.0 | 4.38e-01 | 83.6% | 100.0% |
| 1g19A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 50.0 | 3.41e-01 | 85.2% | 82.1% |
| 5ygbA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 52.0 | 4.84e-01 | 100.0% | 70.0% |
| 1cjcA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.64 | 53.0 | 3.66e-01 | 98.4% | 91.7% |
| 4bb7B00 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.64 | 54.0 | 3.74e-01 | 100.0% | 32.5% |
| 4k7cA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.63 | 53.0 | 3.26e-01 | 96.7% | 24.9% |
| 1wgsA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 50.0 | 3.95e-01 | 95.1% | 40.6% |
| 3htrA00 | 2.30.30.240 | Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain | 0.63 | 55.0 | 4.72e-01 | 98.4% | 61.2% |
| 1gcbA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.62 | 54.0 | 3.30e-01 | 100.0% | 25.0% |
| 1whmA01 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.61 | 53.0 | 5.01e-01 | 96.7% | 100.0% |
| 4p5nA00 | 2.30.30.1060 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 50.0 | 4.75e-01 | 100.0% | 78.4% |
| 3wx1A00 | 2.170.150.20 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. | 0.59 | 41.0 | 3.50e-01 | 85.2% | 41.7% |
| 1y71A00 | 2.30.30.430 | Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain | 0.59 | 50.0 | 4.18e-01 | 100.0% | 54.1% |
| 6bogA02 | 2.30.30.930 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 47.0 | 4.75e-01 | 100.0% | 95.0% |
| 2ec1A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 47.0 | 3.96e-01 | 100.0% | 75.4% |
| 2b0uD02 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.56 | 33.0 | 3.14e-01 | 100.0% | 48.6% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 43.0 | 4.30e-01 | 95.1% | 87.3% |
| 3n7cA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 44.0 | 3.83e-01 | 98.4% | 78.7% |
| 4wiwA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.55 | 38.0 | 3.74e-01 | 75.4% | 66.7% |
| 2pvzB01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.55 | 44.0 | 3.25e-01 | 100.0% | 94.7% |
| 2iw3A05 | 2.40.50.990 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 44.0 | 3.75e-01 | 93.4% | 61.5% |
| 3s24A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 41.0 | 3.68e-01 | 88.5% | 76.6% |
| 3p26A03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 45.0 | 3.79e-01 | 98.4% | 68.2% |
| 8an5A01 | 3.30.460.40 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.53 | 37.0 | 2.70e-01 | 75.4% | 46.4% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.53 | 42.0 | 4.30e-01 | 93.4% | 98.2% |
| 4da2A01 | 2.40.50.580 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 42.0 | 3.87e-01 | 88.5% | 86.1% |
| 3qwmA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 41.0 | 3.45e-01 | 95.1% | 83.5% |
| 6dgiA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.53 | 42.0 | 3.38e-01 | 96.7% | 66.7% |
| 2ijd101 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.52 | 40.0 | 2.93e-01 | 85.2% | 42.8% |
| 3a5zD02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 34.0 | 3.44e-01 | 85.2% | 65.6% |
| 4gc1A02 | 2.90.10.10 | Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain | 0.52 | 38.0 | 3.27e-01 | 80.3% | 89.1% |
| 1y9kA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 35.0 | 3.00e-01 | 73.8% | 41.6% |
| 3wndA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.51 | 43.0 | 3.81e-01 | 98.4% | 62.8% |
| 2fl4A02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 31.0 | 2.67e-01 | 83.6% | 32.7% |
| 2pm6D01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 39.0 | 2.61e-01 | 88.5% | 30.4% |
| 3tzgA00 | 2.40.160.150 | Mainly Beta › Beta Barrel › Porin › | 0.51 | 41.0 | 2.86e-01 | 95.1% | 43.1% |
| 3qexA03 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.50 | 38.0 | 2.55e-01 | 82.0% | 90.9% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3743614 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.79 | 63.0 | 6.41e-01 | 100.0% | 88.3% |
| 3251559 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 56.0 | 6.07e-01 | 96.7% | 98.0% |
| 4025829 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 56.0 | 5.84e-01 | 100.0% | 92.7% |
| 3923769 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.72 | 49.0 | 4.54e-01 | 98.4% | 55.0% |
| 3824699 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.71 | 59.0 | 5.84e-01 | 100.0% | 87.7% |
| 5066224 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.71 | 56.0 | 4.98e-01 | 100.0% | 60.0% |
| 3215393 | 4.1.1.319 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 | 0.70 | 60.0 | 4.52e-01 | 100.0% | 38.7% |
| 3415831 | 4.25.1.2 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD | 0.69 | 61.0 | 4.93e-01 | 100.0% | 78.3% |
| 5080798 | 4.17.1.0 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like | 0.69 | 62.0 | 5.77e-01 | 100.0% | 85.3% |
| 3999482 | 4.1.1.311 ↗ | beta barrels › SH3 › SH3 › SH3 › BRWD_AD | 0.69 | 61.0 | 5.04e-01 | 100.0% | 80.0% |
| 3210897 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 60.0 | 5.42e-01 | 100.0% | 72.9% |
| 4953339 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.68 | 57.0 | 5.26e-01 | 98.4% | 71.2% |
| 5042986 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 55.0 | 5.55e-01 | 100.0% | 90.0% |
| 4425420 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.68 | 61.0 | 5.47e-01 | 100.0% | 78.8% |
| 3931053 | 4.25.1.2 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD | 0.67 | 60.0 | 5.08e-01 | 100.0% | 92.0% |
| 3924760 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 59.0 | 5.21e-01 | 100.0% | 70.0% |
| 3913782 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 58.0 | 5.72e-01 | 100.0% | 92.2% |
| 3730835 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.67 | 54.0 | 4.77e-01 | 98.4% | 60.0% |
| 5072932 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.67 | 57.0 | 5.74e-01 | 98.4% | 98.3% |
| 5079843 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.66 | 55.0 | 5.39e-01 | 96.7% | 87.7% |
| 3728855 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 55.0 | 5.15e-01 | 98.4% | 76.0% |
| 3256053 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.66 | 54.0 | 4.80e-01 | 98.4% | 63.3% |
| 2527304 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.65 | 51.0 | 5.16e-01 | 98.4% | 88.5% |
| 3570369 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.65 | 54.0 | 4.79e-01 | 100.0% | 63.3% |
| 3709896 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 56.0 | 5.08e-01 | 100.0% | 81.2% |
| 3237640 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.64 | 53.0 | 4.42e-01 | 100.0% | 52.7% |
| 3500542 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.64 | 51.0 | 4.54e-01 | 100.0% | 61.1% |
| 3177842 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.63 | 56.0 | 4.49e-01 | 100.0% | 61.7% |
| 4953610 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.63 | 55.0 | 5.07e-01 | 98.4% | 83.3% |
| 3349135 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 54.0 | 4.81e-01 | 100.0% | 80.0% |
| 4954224 | 4.1.1.182 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2097 | 0.62 | 53.0 | 4.66e-01 | 100.0% | 66.3% |
| 3557649 | 4.8.1.20 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N | 0.61 | 54.0 | 4.53e-01 | 100.0% | 89.5% |
| 4018672 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.61 | 52.0 | 4.30e-01 | 98.4% | 62.6% |
| 3480327 | 220.1.1.4 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 | 0.60 | 51.0 | 4.15e-01 | 100.0% | 80.8% |
| 3282644 | 2.24.1.2 ↗ | beta barrels › OB-fold › probable receptor YhhM › probable receptor YhhM › DUF7489 | 0.60 | 42.0 | 4.22e-01 | 83.6% | 72.3% |
| 3600810 | 2003.1.3.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain | 0.59 | 48.0 | 2.88e-01 | 96.7% | 44.0% |
| 5039243 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.59 | 51.0 | 4.70e-01 | 98.4% | 75.0% |
| 5067107 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.59 | 45.0 | 4.11e-01 | 98.4% | 60.0% |
| None | — | 0.59 | 47.0 | 3.09e-01 | 96.7% | 70.0% | |
| 3896126 | 4023.1.1.0 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core | 0.59 | 41.0 | 3.50e-01 | 83.6% | 44.0% |
| 3771406 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 50.0 | 4.05e-01 | 100.0% | 80.0% |
| 3312053 | 708.1.1.8 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FAR1 | 0.57 | 43.0 | 3.65e-01 | 82.0% | 76.2% |
| 3258480 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.57 | 43.0 | 2.83e-01 | 85.2% | 30.0% |
| 4011874 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.56 | 47.0 | 2.92e-01 | 98.4% | 48.5% |
| 4008273 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 42.0 | 4.07e-01 | 100.0% | 74.3% |
| 3935286 | 11.2.1.58 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PF26186 | 0.56 | 49.0 | 3.47e-01 | 100.0% | 46.8% |
| 3901436 | 11.2.1.58 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PF26186 | 0.56 | 48.0 | 3.34e-01 | 100.0% | 43.3% |
| 3959055 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.56 | 42.0 | 4.17e-01 | 100.0% | 78.1% |
| 3238052 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.55 | 43.0 | 2.67e-01 | 88.5% | 24.2% |
| 4682440 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.54 | 42.0 | 3.70e-01 | 100.0% | 55.8% |
| 3059418 | 316.1.1.18 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii | 0.54 | 37.0 | 2.69e-01 | 73.8% | 44.3% |
| 3603127 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.54 | 40.0 | 3.62e-01 | 83.6% | 98.9% |
| 3531333 | 220.1.1.35 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › IQ_SEC7_PH | 0.53 | 45.0 | 3.39e-01 | 100.0% | 56.4% |
| 3383138 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 41.0 | 3.90e-01 | 88.5% | 80.8% |
| 4040055 | 4.26.1.1 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 | 0.52 | 37.0 | 3.83e-01 | 88.5% | 84.5% |
| 3983246 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.52 | 38.0 | 3.47e-01 | 100.0% | 55.8% |
| 3229595 | 76.1.1.3 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › VOMI | 0.51 | 41.0 | 3.49e-01 | 91.8% | 90.0% |
| 3968292 | 3372.1.1.1 ↗ | beta barrels › hypothetical protein PA3229 › hypothetical protein PA3229 › hypothetical protein PA3229 › DUF2790 | 0.51 | 36.0 | 3.74e-01 | 80.3% | 83.6% |
| 3199598 | 206.1.1.71 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo | 0.51 | 35.0 | 2.42e-01 | 85.2% | 17.4% |