←Back to structures
RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00487
Bact-VirRifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00487
Identity
- Kingdom:
- phage
Quality
86.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-81
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6bogA02 | 2.30.30.930 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 48.0 | 5.35e-01 | 93.4% | 88.3% |
| 2f5kA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 46.0 | 5.39e-01 | 86.8% | 100.0% |
| 2efiA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 45.0 | 4.09e-01 | 92.1% | 54.0% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 45.0 | 4.85e-01 | 93.4% | 87.7% |
| 1ycyA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 41.0 | 4.45e-01 | 94.7% | 80.6% |
| 4qqgG00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 48.0 | 4.90e-01 | 93.4% | 86.1% |
| 4emhA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 47.0 | 5.19e-01 | 94.7% | 100.0% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 46.0 | 4.65e-01 | 96.1% | 80.3% |
| 5fpwA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.58 | 51.0 | 3.48e-01 | 100.0% | 74.3% |
| 7xpkA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.57 | 47.0 | 3.85e-01 | 92.1% | 54.5% |
| 3oisB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.56 | 48.0 | 3.37e-01 | 100.0% | 80.9% |
| 1sp4B00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.56 | 48.0 | 3.58e-01 | 97.4% | 95.6% |
| 1xkgA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.56 | 48.0 | 3.28e-01 | 100.0% | 68.1% |
| 4epcA02 | 2.30.30.170 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 47.0 | 4.87e-01 | 90.8% | 97.2% |
| 2kz4A00 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.54 | 42.0 | 3.83e-01 | 88.2% | 95.5% |
| 3pgbA01 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.54 | 43.0 | 2.65e-01 | 89.5% | 61.7% |
| 1d6uA03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.54 | 43.0 | 2.76e-01 | 89.5% | 79.8% |
| 2qggA02 | 2.30.30.240 | Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain | 0.53 | 42.0 | 4.08e-01 | 93.4% | 77.1% |
| 2ig6A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 36.0 | 2.97e-01 | 93.4% | 37.1% |
| 1i5pA03 | 2.100.10.10 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain | 0.53 | 38.0 | 2.89e-01 | 100.0% | 29.8% |
| 3askA02 | 2.30.30.1150 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 40.0 | 3.20e-01 | 92.1% | 41.1% |
| 3agjF01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.52 | 45.0 | 3.78e-01 | 94.7% | 61.4% |
| 1ksiA03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.52 | 41.0 | 2.65e-01 | 89.5% | 77.6% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5032809 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.76 | 53.0 | 4.39e-01 | 93.4% | 42.3% |
| 5066224 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.74 | 52.0 | 4.86e-01 | 93.4% | 61.1% |
| 4937389 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.73 | 51.0 | 4.46e-01 | 93.4% | 50.0% |
| 3876680 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.73 | 54.0 | 4.86e-01 | 93.4% | 59.0% |
| 1567496 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.70 | 47.0 | 5.32e-01 | 90.8% | 93.0% |
| 3511375 | 4.1.1.349 ↗ | beta barrels › SH3 › SH3 › SH3 › ROF | 0.70 | 49.0 | 4.75e-01 | 96.1% | 65.9% |
| 3901117 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.69 | 53.0 | 3.98e-01 | 93.4% | 34.4% |
| 5032454 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.66 | 53.0 | 4.35e-01 | 96.1% | 49.2% |
| 4996733 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.65 | 45.0 | 4.72e-01 | 93.4% | 78.6% |
| 2978978 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.64 | 50.0 | 5.04e-01 | 93.4% | 84.0% |
| 3886139 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.64 | 45.0 | 4.84e-01 | 92.1% | 86.2% |
| 147797 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.63 | 47.0 | 4.88e-01 | 96.1% | 89.7% |
| 3989970 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 48.0 | 5.13e-01 | 88.2% | 93.8% |
| 4947612 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.62 | 51.0 | 4.14e-01 | 93.4% | 47.9% |
| 3210897 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 47.0 | 4.54e-01 | 96.1% | 72.9% |
| 3918299 | 4.1.1.376 ↗ | beta barrels › SH3 › SH3 › SH3 › Chromo_MORC2_6th | 0.61 | 43.0 | 4.46e-01 | 89.5% | 80.0% |
| 3631165 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 47.0 | 4.61e-01 | 94.7% | 76.5% |
| 3848399 | 4.8.1.24 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th | 0.60 | 45.0 | 4.65e-01 | 93.4% | 85.7% |
| 3328224 | 4.1.1.336 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7699 | 0.59 | 50.0 | 4.22e-01 | 93.4% | 69.2% |
| 3806552 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.58 | 49.0 | 3.84e-01 | 94.7% | 60.6% |
| 3972820 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 52.0 | 5.17e-01 | 98.7% | 100.0% |
| 3832249 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.57 | 49.0 | 3.43e-01 | 100.0% | 89.1% |
| 3389304 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.56 | 40.0 | 3.63e-01 | 93.4% | 54.3% |
| 3495032 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.56 | 48.0 | 3.56e-01 | 98.7% | 97.2% |
| 4329871 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.56 | 38.0 | 2.89e-01 | 92.1% | 27.9% |
| 3385856 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.56 | 44.0 | 4.74e-01 | 92.1% | 100.0% |
| 3342793 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.56 | 43.0 | 3.25e-01 | 93.4% | 33.7% |
| 3834112 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.56 | 47.0 | 4.69e-01 | 94.7% | 91.3% |
| 4004815 | 4.1.1.166 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2314 | 0.55 | 42.0 | 3.60e-01 | 93.4% | 50.4% |
| 3803752 | 219.1.1.124 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF29469 | 0.55 | 48.0 | 3.34e-01 | 98.7% | 89.6% |
| 3342814 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.55 | 46.0 | 4.34e-01 | 94.7% | 76.8% |
| 3475789 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.55 | 41.0 | 3.60e-01 | 93.4% | 53.0% |
| 3813985 | 219.1.1.124 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF29469 | 0.54 | 48.0 | 3.44e-01 | 98.7% | 87.6% |
| 4581369 | 4.1.1.166 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2314 | 0.54 | 47.0 | 4.19e-01 | 94.7% | 70.5% |
| 3656346 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 29.0 | 2.84e-01 | 78.9% | 42.0% |
| 3611989 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 46.0 | 3.76e-01 | 100.0% | 92.7% |
| 3698096 | 219.1.1.115 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AIM3_BBC1_C | 0.53 | 48.0 | 3.63e-01 | 100.0% | 77.2% |
| 3782999 | 219.1.1.115 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AIM3_BBC1_C | 0.53 | 48.0 | 3.85e-01 | 100.0% | 90.3% |
| 3633294 | 219.1.1.93 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 | 0.52 | 44.0 | 3.66e-01 | 94.7% | 52.2% |
| 4013893 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.51 | 44.0 | 3.76e-01 | 93.4% | 71.7% |
| 5021635 | 219.1.1.51 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 | 0.51 | 45.0 | 3.62e-01 | 100.0% | 88.3% |
| 3710131 | 4.7.1.0 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 | 0.51 | 43.0 | 3.61e-01 | 100.0% | 93.8% |
| 3790115 | 5.1.4.341 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_2nd | 0.50 | 40.0 | 2.56e-01 | 86.8% | 29.2% |