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RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00507

Bact-Vir

RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00507

Identity

Kingdom:
phage

Quality

93.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-88
PDB
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 54.0 5.70e-01 92.3% 97.1%
1v5mA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 51.0 4.31e-01 85.9% 72.8%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.63 51.0 5.14e-01 100.0% 88.3%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.62 51.0 4.16e-01 89.7% 84.9%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.62 45.0 4.98e-01 100.0% 100.0%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.61 51.0 3.82e-01 100.0% 36.2%
2rovA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 48.0 4.21e-01 85.9% 86.3%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 47.0 4.22e-01 85.9% 87.3%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 5.16e-01 97.4% 95.8%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.59 53.0 4.27e-01 100.0% 60.9%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 42.0 3.77e-01 75.6% 89.7%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 46.0 3.68e-01 87.2% 83.3%
3fssA01 2.30.29.120 Mainly Beta › Roll › PH-domain like › 0.58 45.0 3.80e-01 85.9% 68.4%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.92e-01 85.9% 100.0%
2rceA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 43.0 3.94e-01 80.8% 92.5%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 46.0 4.81e-01 93.6% 94.4%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 39.0 3.11e-01 71.8% 68.8%
3ar4A04 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.57 44.0 3.19e-01 87.2% 98.4%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 45.0 4.78e-01 92.3% 97.1%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 39.0 4.05e-01 97.4% 79.5%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 41.0 3.14e-01 80.8% 50.7%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 38.0 3.53e-01 73.1% 54.4%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 42.0 3.86e-01 82.1% 89.4%
4m9fA00 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 42.0 3.14e-01 82.1% 89.5%
3l6pA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 42.0 3.84e-01 83.3% 73.3%
3b5mA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 38.0 3.39e-01 74.4% 96.6%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.54 42.0 3.38e-01 84.6% 62.1%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 41.0 3.84e-01 83.3% 93.3%
3wyfE00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 42.0 3.53e-01 85.9% 59.2%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.54 41.0 3.86e-01 85.9% 80.8%
2bhgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 41.0 3.79e-01 82.1% 90.2%
4rudA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.54 29.0 3.30e-01 85.9% 69.0%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 47.0 3.64e-01 100.0% 83.1%
3wasA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 43.0 2.82e-01 91.0% 71.7%
3wewA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 37.0 2.74e-01 74.4% 90.6%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 45.0 2.82e-01 94.9% 17.1%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 36.0 3.28e-01 71.8% 57.0%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 44.0 3.92e-01 92.3% 90.4%
4d47A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 42.0 2.75e-01 92.3% 88.8%
5ay6A01 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.53 42.0 3.42e-01 92.3% 97.7%
1wqsA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 45.0 4.09e-01 93.6% 74.8%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.52 40.0 2.66e-01 84.6% 97.2%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 45.0 3.86e-01 100.0% 94.7%
2opjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 41.0 4.03e-01 87.2% 80.2%
2wv9A01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 40.0 3.18e-01 85.9% 48.3%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.51 42.0 3.81e-01 91.0% 88.1%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 41.0 3.42e-01 93.6% 94.9%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 44.0 4.41e-01 94.9% 98.7%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.51 31.0 3.21e-01 88.5% 63.5%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 41.0 3.56e-01 91.0% 92.1%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 42.0 3.89e-01 93.6% 92.0%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 39.0 3.36e-01 89.7% 95.8%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.50 37.0 3.16e-01 83.3% 66.9%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3553983 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.73 53.0 5.98e-01 91.0% 100.0%
3554026 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.72 52.0 5.87e-01 98.7% 100.0%
3241817 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 50.0 5.56e-01 92.3% 98.3%
3212847 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.69 53.0 3.83e-01 80.8% 44.9%
3457163 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.68 51.0 5.07e-01 92.3% 77.5%
3411714 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 45.0 4.76e-01 87.2% 77.1%
3936726 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 45.0 5.15e-01 93.6% 100.0%
3464886 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 47.0 5.24e-01 98.7% 98.3%
3511551 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 47.0 5.19e-01 93.6% 100.0%
3658643 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.63 51.0 4.12e-01 92.3% 46.9%
3845351 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.62 50.0 4.85e-01 100.0% 77.8%
3373583 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 51.0 5.33e-01 92.3% 97.1%
3222570 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 48.0 4.29e-01 85.9% 78.3%
3559960 2006.1.6.66 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF4537 0.62 48.0 5.10e-01 93.6% 92.9%
3834563 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 49.0 4.88e-01 88.5% 82.5%
3614205 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 49.0 4.10e-01 88.5% 71.4%
3913637 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.61 51.0 4.87e-01 100.0% 80.0%
3855974 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.61 48.0 4.88e-01 93.6% 86.7%
3939453 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 47.0 4.05e-01 85.9% 80.0%
3774692 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.60 49.0 4.92e-01 93.6% 88.7%
3739251 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 51.0 3.11e-01 93.6% 87.9%
3608011 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 51.0 4.39e-01 93.6% 68.3%
3826751 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 47.0 4.74e-01 91.0% 83.7%
5031837 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.59 47.0 3.26e-01 87.2% 55.3%
3538619 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 47.0 3.99e-01 85.9% 67.7%
3601624 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 50.0 4.48e-01 91.0% 72.4%
4174957 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.59 53.0 3.96e-01 100.0% 47.2%
3315951 220.1.1.86 beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.59 46.0 4.59e-01 85.9% 93.7%
3497731 220.1.1.56 beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH 0.59 46.0 3.88e-01 85.9% 61.5%
3579405 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.59 46.0 3.26e-01 87.2% 97.7%
3815495 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.58 46.0 4.80e-01 98.7% 94.3%
3713672 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 50.0 4.34e-01 92.3% 66.1%
3670800 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.57 45.0 3.40e-01 87.2% 99.0%
3738197 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.57 43.0 3.42e-01 82.1% 87.9%
3342793 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.57 48.0 3.59e-01 92.3% 38.4%
4929262 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.57 48.0 3.81e-01 94.9% 46.5%
1311889 1.1.5.7 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.57 44.0 3.14e-01 84.6% 35.0%
3358748 4.1.1.94 beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.57 49.0 4.87e-01 93.6% 98.8%
3646890 4.25.1.1 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › Auxin_resp 0.56 49.0 4.80e-01 94.9% 88.2%
4930890 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 43.0 4.41e-01 98.7% 84.0%
3718969 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 48.0 3.68e-01 93.6% 77.7%
None 0.56 44.0 3.48e-01 85.9% 51.8%
4982354 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.56 43.0 4.61e-01 88.5% 96.9%
3828371 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.56 47.0 4.63e-01 96.2% 84.7%
3879755 4.1.1.169 beta barrels › SH3 › SH3 › SH3 › DUF4819 0.56 48.0 4.34e-01 94.9% 74.3%
169988 1.1.5.6 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S7 0.56 43.0 3.41e-01 85.9% 49.7%
3322460 4.1.1.94 beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.56 48.0 4.22e-01 94.9% 70.4%
3812766 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.55 44.0 4.68e-01 89.7% 97.1%
3830352 4.1.1.94 beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.55 48.0 4.67e-01 94.9% 95.3%
3650296 4.1.1.94 beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.55 48.0 4.47e-01 94.9% 84.2%
3482225 4.1.1.300 beta barrels › SH3 › SH3 › SH3 › KN17_SH3, SH3_KIN17_C 0.55 46.0 3.86e-01 91.0% 87.7%
3164015 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 40.0 3.41e-01 76.9% 73.6%
2410381 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.55 47.0 4.72e-01 98.7% 93.7%
3520654 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.54 47.0 3.78e-01 94.9% 71.3%
3717986 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.54 48.0 4.21e-01 98.7% 67.8%
4319764 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.54 46.0 4.07e-01 94.9% 65.5%
5080798 4.17.1.0 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like 0.54 43.0 4.45e-01 88.5% 92.0%
4870495 304.169.1.1 a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain › WYL 0.53 44.0 3.99e-01 98.7% 66.7%
4466506 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 45.0 4.62e-01 94.9% 100.0%
3357709 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.53 46.0 4.54e-01 98.7% 89.4%
2866962 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.52 43.0 3.87e-01 93.6% 65.7%
4989640 7512.1.1.24 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_5 0.52 43.0 2.98e-01 94.9% 64.4%
5034832 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 42.0 4.46e-01 89.7% 100.0%
4387111 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.51 44.0 4.38e-01 94.9% 100.0%
3967745 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.51 44.0 4.52e-01 96.2% 98.7%
5001346 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 37.0 3.18e-01 100.0% 48.8%
3210796 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.50 43.0 2.78e-01 98.7% 25.8%
5064712 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.50 39.0 3.07e-01 85.9% 92.6%
4366483 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.50 44.0 4.28e-01 96.2% 91.8%