←Back to structures
RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00523
Bact-VirRifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00523
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-109
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_407201_prodigal-single.1__X__X__00193__D17-115
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5mu3B00 | 3.40.50.12050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 38.0 | 3.36e-01 | 71.6% | 41.7% |
| 3d3rA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 26.0 | 2.97e-01 | 82.6% | 59.0% |
| 2fkiA00 | 3.90.1150.30 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.53 | 37.0 | 3.61e-01 | 71.6% | 74.6% |
| 8ainB01 | 3.10.450.250 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › S. aureus uracil DNA glycosylase inhibitor | 0.52 | 34.0 | 3.50e-01 | 100.0% | 68.6% |
| 2icsA01 | 2.30.40.10 | Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 | 0.51 | 29.0 | 2.98e-01 | 93.6% | 57.4% |
| 4lhfA00 | 6.10.200.10 | Special › Helix non-globular › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Regulatory phage protein Cox | 0.50 | 22.0 | 2.53e-01 | 92.7% | 54.4% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4958977 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.58 | 37.0 | 4.01e-01 | 78.9% | 76.7% |
| 4973678 | 2484.2.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain | 0.55 | 33.0 | 4.06e-01 | 90.8% | 94.3% |
| 3619457 | 4099.1.1.11 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14 | 0.55 | 38.0 | 3.52e-01 | 71.6% | 60.0% |
| 3690503 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.55 | 38.0 | 3.81e-01 | 70.6% | 79.8% |
| 4954638 | 241.9.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF5655 | 0.55 | 38.0 | 3.82e-01 | 71.6% | 72.8% |
| 1095153 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.52 | 36.0 | 2.54e-01 | 70.6% | 85.5% |
| 3224446 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.52 | 38.0 | 3.17e-01 | 77.1% | 91.7% |
| 3952442 | 213.1.1.25 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 | 0.52 | 38.0 | 3.66e-01 | 78.0% | 86.9% |
| 4995678 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 25.0 | 3.19e-01 | 78.9% | 85.5% |