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RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00557
Bact-VirRifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00557
Identity
- Kingdom:
- phage
Quality
88.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-70
Domain cluster:
representative
CATH (50)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2o5iN07 | 1.10.132.30 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain | 0.88 | 80.0 | 5.89e-01 | 100.0% | 43.1% |
| 3iylU02 | 1.10.287.1520 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.88 | 75.0 | 7.25e-01 | 93.8% | 84.9% |
| 5uh5D02 | 1.10.132.30 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain | 0.88 | 78.0 | 5.54e-01 | 100.0% | 36.2% |
| 1zmbA02 | 6.10.170.10 | Special › Helix non-globular › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.87 | 62.0 | 7.02e-01 | 79.2% | 100.0% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.85 | 76.0 | 5.75e-01 | 100.0% | 47.7% |
| 6vudA01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.85 | 75.0 | 5.73e-01 | 100.0% | 47.7% |
| 4k08A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.83 | 67.0 | 4.73e-01 | 95.8% | 29.9% |
| 1tj7A01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.82 | 68.0 | 5.18e-01 | 89.6% | 41.9% |
| 4jleA00 | 6.10.280.180 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium RESA, N-terminal helical domain | 0.81 | 69.0 | 4.94e-01 | 100.0% | 32.2% |
| 2d2sA02 | 1.20.58.1220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, C-terminal helical domain | 0.81 | 71.0 | 5.58e-01 | 100.0% | 54.5% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.80 | 60.0 | 5.46e-01 | 79.2% | 62.9% |
| 2mpnA00 | 6.10.140.1340 | Special › Helix non-globular › Helix Hairpins › | 0.80 | 68.0 | 6.06e-01 | 95.8% | 76.5% |
| 3kd3A02 | 1.10.150.210 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 | 0.79 | 56.0 | 5.19e-01 | 75.0% | 60.0% |
| 3cx3B01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.77 | 67.0 | 4.69e-01 | 100.0% | 33.1% |
| 1t72A02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.76 | 65.0 | 5.18e-01 | 97.9% | 50.0% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.74 | 63.0 | 4.79e-01 | 95.8% | 61.4% |
| 1pixA03 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.74 | 65.0 | 3.97e-01 | 100.0% | 39.8% |
| 2e62A01 | 6.10.140.420 | Special › Helix non-globular › Helix Hairpins › | 0.74 | 59.0 | 5.80e-01 | 91.7% | 86.5% |
| 1wpbG01 | 1.10.287.680 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.74 | 53.0 | 5.13e-01 | 77.1% | 77.8% |
| 5b1oA00 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.72 | 54.0 | 4.92e-01 | 100.0% | 60.0% |
| 3qnmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.71 | 56.0 | 4.61e-01 | 89.6% | 46.7% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.71 | 60.0 | 5.08e-01 | 100.0% | 58.8% |
| 2e9xA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 60.0 | 4.37e-01 | 93.8% | 55.5% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 56.0 | 5.08e-01 | 91.7% | 64.6% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.70 | 57.0 | 5.19e-01 | 89.6% | 84.4% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.70 | 58.0 | 5.05e-01 | 93.8% | 64.9% |
| 1b3qA01 | 1.10.287.560 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain | 0.70 | 55.0 | 5.06e-01 | 85.4% | 71.0% |
| 2db7A01 | 6.10.250.980 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.70 | 53.0 | 5.19e-01 | 87.5% | 83.0% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.69 | 59.0 | 5.00e-01 | 95.8% | 58.2% |
| 7ymiZ01 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.69 | 55.0 | 5.21e-01 | 91.7% | 72.4% |
| 3zdmB00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.69 | 52.0 | 5.20e-01 | 83.3% | 88.0% |
| 3ehfD01 | 1.20.5.1930 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.69 | 59.0 | 5.47e-01 | 97.9% | 85.7% |
| 3jcuZ00 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.68 | 53.0 | 4.98e-01 | 91.7% | 68.9% |
| 1skvA00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.68 | 55.0 | 5.05e-01 | 91.7% | 75.0% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 54.0 | 4.20e-01 | 87.5% | 73.5% |
| 3dmqA08 | 6.10.140.1500 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 54.0 | 4.68e-01 | 97.9% | 57.5% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.66 | 50.0 | 4.08e-01 | 83.3% | 48.9% |
| 3kr9A02 | 1.10.287.1890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 49.0 | 4.50e-01 | 83.3% | 62.3% |
| 2fb5A01 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.65 | 57.0 | 4.97e-01 | 97.9% | 68.1% |
| 1np7A02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.65 | 53.0 | 4.08e-01 | 95.8% | 99.2% |
| 3k6tB00 | 1.20.5.4010 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.65 | 51.0 | 5.14e-01 | 91.7% | 83.7% |
| 6t0bc01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 57.0 | 4.82e-01 | 100.0% | 64.1% |
| 1r1dA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.63 | 46.0 | 3.05e-01 | 85.4% | 16.5% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.63 | 48.0 | 4.42e-01 | 87.5% | 98.5% |
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 49.0 | 4.11e-01 | 91.7% | 48.3% |
| 1l5jA03 | 3.40.1060.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aconitase; Domain 2 › Aconitase, Domain 2 | 0.61 | 52.0 | 3.62e-01 | 100.0% | 27.7% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 51.0 | 4.50e-01 | 95.8% | 63.5% |
| 2qkdA02 | 2.60.120.1040 | Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain | 0.57 | 40.0 | 2.97e-01 | 85.4% | 25.7% |
| 4jvyB00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.56 | 47.0 | 3.12e-01 | 97.9% | 23.7% |
| 5t1dB00 | 3.10.390.20 | Alpha Beta › Roll › SAND domain › Viral glycoprotein L | 0.51 | 37.0 | 3.17e-01 | 91.7% | 43.4% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3477975 | 7023.1.1.0 ↗ | alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein | 0.93 | 78.0 | 5.68e-01 | 100.0% | 37.4% |
| 3691750 | 376.1.1.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box | 0.91 | 84.0 | 5.74e-01 | 100.0% | 34.9% |
| 3265542 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.88 | 70.0 | 7.35e-01 | 87.5% | 100.0% |
| 3988447 | 5043.1.1.0 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like | 0.88 | 76.0 | 7.28e-01 | 95.8% | 85.5% |
| 3392260 | 6026.1.1.0 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain | 0.86 | 76.0 | 6.70e-01 | 100.0% | 68.6% |
| 3218210 | 2004.1.1.184 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 | 0.85 | 75.0 | 4.60e-01 | 100.0% | 18.2% |
| 3412555 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.84 | 74.0 | 5.58e-01 | 97.9% | 61.8% |
| 3297889 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.83 | 70.0 | 4.52e-01 | 93.8% | 22.4% |
| 4346136 | 605.1.1.108 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › GrpE | 0.83 | 70.0 | 6.34e-01 | 100.0% | 69.2% |
| 4620052 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.83 | 74.0 | 4.34e-01 | 100.0% | 14.0% |
| None | — | 0.83 | 75.0 | 4.20e-01 | 100.0% | 10.1% | |
| 2772104 | 103.1.1.13 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RNA_pol_Rpo13 | 0.82 | 67.0 | 6.99e-01 | 89.6% | 100.0% |
| 3466340 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.81 | 68.0 | 4.33e-01 | 93.8% | 21.3% |
| 3686609 | 6026.1.1.0 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain | 0.80 | 68.0 | 5.56e-01 | 97.9% | 53.3% |
| 3725377 | 192.15.1.44 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › DUF6604 | 0.79 | 70.0 | 5.64e-01 | 97.9% | 54.4% |
| 3895581 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.78 | 59.0 | 4.48e-01 | 87.5% | 33.6% |
| 3764064 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.77 | 66.0 | 5.57e-01 | 100.0% | 56.5% |
| 3479771 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.77 | 62.0 | 4.04e-01 | 91.7% | 21.0% |
| 3486312 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.77 | 62.0 | 4.69e-01 | 91.7% | 37.8% |
| 3773906 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.77 | 62.0 | 4.02e-01 | 91.7% | 20.5% |
| 3282520 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.76 | 62.0 | 5.45e-01 | 89.6% | 81.4% |
| 3476064 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.75 | 61.0 | 4.60e-01 | 91.7% | 37.5% |
| 4463205 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.75 | 65.0 | 3.71e-01 | 97.9% | 10.2% |
| 3621479 | 6026.1.1.1 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 | 0.74 | 59.0 | 5.03e-01 | 93.8% | 52.9% |
| 3769584 | 4146.1.1.4 ↗ | alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › FAM216B | 0.74 | 59.0 | 5.01e-01 | 89.6% | 53.8% |
| 3732913 | 316.1.1.11 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › GrpB | 0.74 | 61.0 | 4.23e-01 | 97.9% | 29.1% |
| 3366371 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.73 | 60.0 | 3.73e-01 | 91.7% | 30.0% |
| 5043641 | 205.1.1.16 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 | 0.73 | 61.0 | 4.06e-01 | 95.8% | 26.7% |
| 5051746 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.72 | 58.0 | 5.00e-01 | 91.7% | 56.2% |
| 3598168 | 3755.1.1.0 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related | 0.72 | 60.0 | 4.10e-01 | 97.9% | 27.3% |
| 3930836 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.71 | 59.0 | 4.47e-01 | 97.9% | 38.3% |
| 2636640 | 192.15.1.3 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Vps23_core | 0.70 | 60.0 | 5.19e-01 | 97.9% | 67.5% |
| 5039030 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.70 | 60.0 | 5.80e-01 | 95.8% | 87.3% |
| 5065070 | 192.15.1.3 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Vps23_core | 0.70 | 57.0 | 5.20e-01 | 91.7% | 69.2% |
| 3539738 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.70 | 60.0 | 3.89e-01 | 100.0% | 23.1% |
| 3485413 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.68 | 56.0 | 5.62e-01 | 95.8% | 88.0% |
| 3700089 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.68 | 62.0 | 5.54e-01 | 100.0% | 89.2% |
| 3403130 | 4323.1.1.1 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.67 | 58.0 | 4.05e-01 | 100.0% | 69.1% |
| 4000037 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.66 | 54.0 | 5.06e-01 | 93.8% | 75.0% |
| 4025064 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.66 | 57.0 | 5.17e-01 | 97.9% | 75.4% |
| 144301 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.56 | 44.0 | 4.05e-01 | 97.9% | 67.1% |