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RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00558
Bact-VirRifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00558
Identity
- Kingdom:
- phage
Quality
86.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-124
Domain cluster:
rep: IMGVR_UViG_2799112904_000001-2799112904-2800861694__D3-92
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6f1uK02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.64 | 57.0 | 5.35e-01 | 96.7% | 91.0% |
| 2ebmA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.64 | 56.0 | 5.53e-01 | 100.0% | 91.4% |
| 4htgA03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.62 | 41.0 | 4.79e-01 | 89.2% | 100.0% |
| 4akrA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.61 | 54.0 | 5.09e-01 | 97.5% | 92.5% |
| 1ul7A00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.61 | 40.0 | 4.25e-01 | 84.2% | 76.5% |
| 2dayA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.61 | 51.0 | 5.27e-01 | 91.7% | 100.0% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 34.0 | 4.09e-01 | 70.0% | 91.9% |
| 4gn2A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.56 | 47.0 | 3.82e-01 | 94.2% | 74.6% |
| 2w4yA00 | 2.40.160.220 | Mainly Beta › Beta Barrel › Porin › | 0.55 | 43.0 | 4.35e-01 | 82.5% | 90.2% |
| 4x2oA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 40.0 | 3.57e-01 | 77.5% | 95.5% |
| 2ichA01 | 2.40.370.10 | Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain | 0.54 | 48.0 | 4.16e-01 | 94.2% | 88.3% |
| 3gkeA02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.54 | 37.0 | 3.09e-01 | 71.7% | 40.0% |
| 3nv0A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 39.0 | 3.37e-01 | 75.8% | 100.0% |
| 1nhpA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.54 | 38.0 | 3.93e-01 | 80.0% | 77.9% |
| 1yqzA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.53 | 37.0 | 3.86e-01 | 78.3% | 79.6% |
| 2cduA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.53 | 37.0 | 3.83e-01 | 79.2% | 77.9% |
| 2p0wA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 38.0 | 3.73e-01 | 75.8% | 73.7% |
| 1luiA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.52 | 41.0 | 4.29e-01 | 85.8% | 92.6% |
| 7uzsX03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 36.0 | 3.69e-01 | 80.0% | 73.9% |
| 1q40D00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 37.0 | 3.26e-01 | 73.3% | 94.9% |
| 1cx8A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.51 | 44.0 | 3.38e-01 | 100.0% | 89.6% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4976136 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.67 | 42.0 | 4.65e-01 | 84.2% | 78.9% |
| 4977257 | 2003.1.5.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 | 0.66 | 36.0 | 2.81e-01 | 79.2% | 25.2% |
| 3614913 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.65 | 44.0 | 5.11e-01 | 91.7% | 98.8% |
| 3510355 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.64 | 58.0 | 5.81e-01 | 98.3% | 98.3% |
| 3815916 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.64 | 57.0 | 5.48e-01 | 100.0% | 95.0% |
| 3663259 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.64 | 49.0 | 4.74e-01 | 80.8% | 72.6% |
| 3514245 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.64 | 46.0 | 4.77e-01 | 75.8% | 91.3% |
| 3613742 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.63 | 48.0 | 3.24e-01 | 80.0% | 32.7% |
| 3607851 | 9.15.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD | 0.63 | 48.0 | 3.67e-01 | 79.2% | 66.8% |
| 3397367 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.63 | 52.0 | 4.70e-01 | 89.2% | 92.7% |
| 3990414 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.63 | 56.0 | 5.39e-01 | 100.0% | 95.7% |
| 3482965 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.63 | 55.0 | 5.35e-01 | 95.0% | 98.5% |
| 3926039 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.63 | 43.0 | 4.72e-01 | 70.8% | 98.0% |
| 3934735 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.62 | 43.0 | 4.65e-01 | 70.0% | 98.0% |
| 3715712 | 2485.2.1.1 ↗ | a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert | 0.62 | 45.0 | 4.72e-01 | 98.3% | 85.7% |
| 3925421 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.62 | 43.0 | 4.66e-01 | 70.0% | 98.0% |
| 3489888 | 881.1.1.2 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1 | 0.62 | 48.0 | 4.34e-01 | 80.8% | 62.5% |
| 3724523 | 4121.1.1.7 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › PF26616 | 0.62 | 37.0 | 2.64e-01 | 76.7% | 19.4% |
| 3596328 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.61 | 50.0 | 4.52e-01 | 89.2% | 93.5% |
| 3218632 | 77.1.1.0 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein | 0.61 | 40.0 | 4.47e-01 | 81.7% | 84.0% |
| 3611917 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.61 | 53.0 | 4.76e-01 | 95.0% | 96.4% |
| 3577548 | 331.12.1.0 ↗ | a+b two layers › TBP-like › YugN-like › YugN-like | 0.61 | 47.0 | 4.88e-01 | 83.3% | 85.8% |
| 3829111 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.61 | 50.0 | 4.09e-01 | 86.7% | 51.9% |
| 3715923 | 5.1.3.28 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 | 0.60 | 52.0 | 3.60e-01 | 96.7% | 86.2% |
| 3990957 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.60 | 53.0 | 5.13e-01 | 99.2% | 91.9% |
| 4526286 | 331.3.1.19 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VanA_C | 0.59 | 41.0 | 3.27e-01 | 70.0% | 38.7% |
| 3710521 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.59 | 52.0 | 4.84e-01 | 98.3% | 96.8% |
| 3230977 | 4099.1.1.48 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Rgr-1_C | 0.59 | 51.0 | 4.97e-01 | 94.2% | 97.7% |
| 4984054 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.59 | 54.0 | 4.36e-01 | 100.0% | 87.1% |
| 3552620 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.58 | 52.0 | 5.23e-01 | 98.3% | 98.3% |
| 3622477 | 223.2.1.6 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN | 0.58 | 45.0 | 3.53e-01 | 81.7% | 49.4% |
| 5052250 | 12.3.1.15 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › AmyA-gluTrfs_C | 0.58 | 43.0 | 3.29e-01 | 79.2% | 94.1% |
| 3840079 | 4998.1.1.1 ↗ | beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 | 0.57 | 47.0 | 4.33e-01 | 92.5% | 69.3% |
| 3433806 | 5.1.2.29 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DUF1668 | 0.57 | 44.0 | 3.60e-01 | 81.7% | 100.0% |
| 3399255 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.57 | 49.0 | 5.06e-01 | 95.0% | 100.0% |
| 3300715 | 220.1.1.32 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind | 0.57 | 43.0 | 3.69e-01 | 78.3% | 65.3% |
| 3586630 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.57 | 46.0 | 3.39e-01 | 85.0% | 54.2% |
| 3683559 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.56 | 40.0 | 3.27e-01 | 73.3% | 80.5% |
| 3474976 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.56 | 41.0 | 4.05e-01 | 85.0% | 71.5% |
| 135591 | 265.1.1.4 ↗ | a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › PhiCb5_coat | 0.55 | 43.0 | 4.35e-01 | 82.5% | 90.2% |
| 3270992 | 216.1.1.3 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UEV | 0.55 | 49.0 | 4.69e-01 | 100.0% | 85.7% |
| 3514330 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.55 | 42.0 | 4.58e-01 | 80.8% | 100.0% |
| 3783256 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.55 | 45.0 | 3.87e-01 | 86.7% | 97.8% |
| 3818630 | 897.1.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 | 0.55 | 45.0 | 4.04e-01 | 90.8% | 77.1% |
| 3594550 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 38.0 | 3.45e-01 | 72.5% | 94.5% |
| 3461242 | 331.4.1.1 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 | 0.53 | 39.0 | 4.03e-01 | 83.3% | 82.7% |
| 3784816 | 331.9.1.1 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Alpha_adaptin_C | 0.53 | 39.0 | 3.87e-01 | 75.8% | 84.8% |
| 4965879 | 881.1.1.44 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF6517 | 0.53 | 45.0 | 3.92e-01 | 94.2% | 89.2% |
| 3795199 | 11.10.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 | 0.52 | 45.0 | 4.13e-01 | 94.2% | 89.0% |
| 3740523 | 331.3.1.6 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI | 0.52 | 45.0 | 4.16e-01 | 100.0% | 74.5% |
| 3493866 | 216.1.1.26 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › FmiP_Thoc5 | 0.51 | 39.0 | 4.16e-01 | 83.3% | 91.4% |
| 3275958 | 848.1.1.1 ↗ | a+b complex topology › Hsp33 domain › Hsp33 domain › Hsp33 domain › HSP33 | 0.51 | 42.0 | 3.47e-01 | 89.2% | 51.8% |
| 3733936 | 11.8.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like | 0.51 | 45.0 | 3.95e-01 | 97.5% | 100.0% |