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RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00572
Bact-VirRifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00572
Identity
- Kingdom:
- phage
Quality
92.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 65-120
Domain cluster:
representative
CATH (52)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lt1A00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.80 | 49.0 | 4.43e-01 | 83.9% | 46.7% |
| 1mpgA01 | 3.30.310.20 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain | 0.69 | 42.0 | 3.35e-01 | 82.1% | 30.4% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.69 | 48.0 | 4.84e-01 | 98.2% | 73.2% |
| 4nqrA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.68 | 43.0 | 3.06e-01 | 83.9% | 22.6% |
| 2cqaA01 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.66 | 49.0 | 4.56e-01 | 100.0% | 62.2% |
| 2fblB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.64 | 48.0 | 3.62e-01 | 83.9% | 60.1% |
| 5aykA07 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.63 | 52.0 | 4.15e-01 | 92.9% | 73.0% |
| 1krlA00 | 6.20.50.130 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.62 | 39.0 | 4.20e-01 | 85.7% | 79.5% |
| 3dsbA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.62 | 41.0 | 3.41e-01 | 80.4% | 37.6% |
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 43.0 | 3.88e-01 | 98.2% | 50.6% |
| 2krtA01 | 3.10.450.270 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 46.0 | 3.76e-01 | 87.5% | 43.7% |
| 6jhpA01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.61 | 48.0 | 3.00e-01 | 85.7% | 16.8% |
| 1o97D01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.59 | 40.0 | 2.81e-01 | 96.4% | 20.6% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 39.0 | 3.83e-01 | 91.1% | 60.0% |
| 6u5vB07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.59 | 40.0 | 3.09e-01 | 83.9% | 31.0% |
| 1xteA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.59 | 51.0 | 4.05e-01 | 98.2% | 63.8% |
| 4h40A01 | 2.60.40.3730 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like | 0.58 | 49.0 | 3.64e-01 | 98.2% | 55.1% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 41.0 | 3.88e-01 | 91.1% | 62.3% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.57 | 38.0 | 3.85e-01 | 83.9% | 66.7% |
| 2rajA02 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.57 | 49.0 | 3.85e-01 | 100.0% | 59.5% |
| 4d10F01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.56 | 43.0 | 3.01e-01 | 89.3% | 25.1% |
| 8jx6A02 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 38.0 | 3.20e-01 | 89.3% | 37.9% |
| 4fumA01 | 2.20.230.10 | Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. | 0.56 | 44.0 | 4.03e-01 | 85.7% | 85.1% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 43.0 | 4.08e-01 | 91.1% | 69.0% |
| 2eo6A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.56 | 43.0 | 3.47e-01 | 83.9% | 56.5% |
| 1sezA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 48.0 | 3.40e-01 | 100.0% | 52.2% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 40.0 | 3.87e-01 | 96.4% | 69.8% |
| 7oufB01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 47.0 | 3.54e-01 | 100.0% | 45.6% |
| 1ao7B00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 47.0 | 3.90e-01 | 100.0% | 93.0% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 39.0 | 3.75e-01 | 96.4% | 66.7% |
| 4l2iA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.54 | 36.0 | 2.58e-01 | 96.4% | 20.0% |
| 2o95B00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.54 | 42.0 | 3.01e-01 | 87.5% | 88.6% |
| 3bp6B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 45.0 | 3.96e-01 | 98.2% | 98.9% |
| 2v8qB00 | 6.20.250.60 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.53 | 33.0 | 3.17e-01 | 83.9% | 47.9% |
| 1rypC00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.53 | 41.0 | 2.84e-01 | 94.6% | 81.1% |
| 4m37A02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.52 | 43.0 | 3.20e-01 | 100.0% | 84.7% |
| 3fssA01 | 2.30.29.120 | Mainly Beta › Roll › PH-domain like › | 0.52 | 45.0 | 3.45e-01 | 100.0% | 53.7% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 39.0 | 3.61e-01 | 91.1% | 62.7% |
| 2qrdB01 | 2.20.25.290 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.52 | 33.0 | 3.54e-01 | 83.9% | 94.6% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.52 | 37.0 | 3.86e-01 | 87.5% | 91.7% |
| 1gpqB00 | 3.40.1420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme | 0.52 | 41.0 | 3.30e-01 | 96.4% | 58.6% |
| 7mwzD01 | 3.40.50.12100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein | 0.51 | 38.0 | 2.78e-01 | 87.5% | 26.1% |
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 37.0 | 3.00e-01 | 83.9% | 36.6% |
| 4oxwA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 42.0 | 3.57e-01 | 100.0% | 74.5% |
| 1ufvA02 | 3.30.1300.10 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain | 0.51 | 35.0 | 2.99e-01 | 80.4% | 41.4% |
| 2ci9B00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 42.0 | 3.48e-01 | 96.4% | 52.0% |
| 2qkdA03 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.51 | 33.0 | 3.40e-01 | 80.4% | 70.6% |
| 3mxtA02 | 3.30.1300.10 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain | 0.50 | 36.0 | 3.11e-01 | 80.4% | 79.0% |
| 1ni9A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.50 | 39.0 | 2.93e-01 | 87.5% | 94.0% |
| 4ebrA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.50 | 39.0 | 2.98e-01 | 94.6% | 33.1% |
| 6fezA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.50 | 43.0 | 3.71e-01 | 100.0% | 84.0% |
| 5c17A00 | 3.30.450.410 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.50 | 41.0 | 2.92e-01 | 98.2% | 95.6% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3287903 | 802.1.1.1 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom | 0.86 | 61.0 | 6.47e-01 | 100.0% | 84.0% |
| 5054994 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.86 | 55.0 | 5.91e-01 | 87.5% | 77.1% |
| 4942807 | 4.26.1.0 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 | 0.78 | 58.0 | 5.74e-01 | 98.2% | 76.3% |
| 5048387 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.72 | 48.0 | 4.77e-01 | 85.7% | 65.0% |
| 3511010 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.68 | 42.0 | 4.77e-01 | 80.4% | 100.0% |
| 4329624 | 2.4.1.12 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal | 0.67 | 47.0 | 3.90e-01 | 100.0% | 40.0% |
| 5018717 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.65 | 44.0 | 4.52e-01 | 83.9% | 72.7% |
| 3387958 | 868.1.1.0 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related | 0.65 | 49.0 | 3.63e-01 | 83.9% | 59.4% |
| 4311698 | 241.2.1.6 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › PF26204 | 0.65 | 38.0 | 3.10e-01 | 82.1% | 29.1% |
| 5013748 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.64 | 47.0 | 3.23e-01 | 98.2% | 22.0% |
| 3793090 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.64 | 47.0 | 2.90e-01 | 100.0% | 11.7% |
| 4965032 | 375.1.1.343 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7835 | 0.63 | 48.0 | 4.89e-01 | 82.1% | 92.7% |
| 5008409 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 48.0 | 4.20e-01 | 98.2% | 53.8% |
| 3972580 | 331.1.1.3 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › AlkA_N | 0.61 | 38.0 | 3.42e-01 | 82.1% | 42.5% |
| 3693121 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.61 | 47.0 | 3.82e-01 | 85.7% | 46.4% |
| 3266842 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.61 | 53.0 | 4.10e-01 | 98.2% | 72.0% |
| 4018119 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.61 | 52.0 | 3.16e-01 | 96.4% | 17.0% |
| 3630854 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.61 | 48.0 | 3.33e-01 | 89.3% | 68.2% |
| 3608236 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.61 | 42.0 | 4.09e-01 | 94.6% | 64.6% |
| 4023312 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.59 | 51.0 | 3.99e-01 | 98.2% | 72.0% |
| 3251342 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.59 | 52.0 | 4.05e-01 | 98.2% | 64.2% |
| 1095153 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.59 | 51.0 | 3.05e-01 | 96.4% | 23.0% |
| 3716895 | 3698.1.1.0 ↗ | beta sandwiches › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain | 0.59 | 46.0 | 3.18e-01 | 85.7% | 50.5% |
| 4879829 | 222.1.1.17 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N | 0.58 | 44.0 | 3.71e-01 | 82.1% | 97.9% |
| 3820157 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.58 | 41.0 | 2.92e-01 | 100.0% | 23.2% |
| 5021275 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 48.0 | 3.99e-01 | 100.0% | 66.4% |
| 3376660 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 46.0 | 4.17e-01 | 100.0% | 65.0% |
| 3990002 | 802.1.1.0 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 | 0.57 | 49.0 | 4.32e-01 | 100.0% | 75.3% |
| 5079075 | 7592.1.1.0 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains | 0.56 | 41.0 | 2.95e-01 | 80.4% | 26.9% |
| 5041307 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 49.0 | 3.16e-01 | 100.0% | 93.1% |
| 3265170 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.56 | 40.0 | 3.90e-01 | 96.4% | 67.7% |
| 4025734 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.56 | 47.0 | 3.18e-01 | 98.2% | 45.3% |
| 3788285 | 395.1.1.4 ↗ | few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › Flocculin_t3 | 0.56 | 44.0 | 4.59e-01 | 85.7% | 100.0% |
| 3391411 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 36.0 | 4.04e-01 | 83.9% | 97.5% |
| 3940986 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.55 | 43.0 | 4.01e-01 | 96.4% | 66.7% |
| 4862766 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 41.0 | 3.74e-01 | 89.3% | 59.7% |
| 3316240 | 2003.1.2.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like | 0.55 | 47.0 | 3.40e-01 | 100.0% | 48.2% |
| 4844428 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.55 | 46.0 | 4.24e-01 | 100.0% | 85.3% |
| 3998929 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 43.0 | 3.41e-01 | 92.9% | 42.3% |
| 3904071 | 214.1.1.11 ↗ | a+b two layers › SH2 › SH2 › SH2 › PF27628 | 0.54 | 47.0 | 3.70e-01 | 100.0% | 67.5% |
| 3172576 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.53 | 46.0 | 3.69e-01 | 100.0% | 77.4% |
| 5047667 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 44.0 | 3.72e-01 | 96.4% | 54.0% |
| 3251381 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.52 | 46.0 | 4.40e-01 | 100.0% | 93.8% |
| 4017879 | 3385.1.1.0 ↗ | beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 | 0.52 | 41.0 | 3.26e-01 | 89.3% | 47.2% |
| 3255739 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.52 | 45.0 | 4.26e-01 | 100.0% | 87.1% |
| 5005052 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.51 | 36.0 | 3.70e-01 | 82.1% | 76.4% |